miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20778 3' -57.4 NC_004689.1 + 68052 0.66 0.660523
Target:  5'- --cGCCUUuCGGCCuuCUGGUgUGAGg -3'
miRNA:   3'- cuaCGGGAuGCCGGuuGACCGgGUUC- -5'
20778 3' -57.4 NC_004689.1 + 48764 0.66 0.649735
Target:  5'- cGUGCCUUGCGGgCAucgcGCUcGGCCUu-- -3'
miRNA:   3'- cUACGGGAUGCCgGU----UGA-CCGGGuuc -5'
20778 3' -57.4 NC_004689.1 + 65517 0.66 0.649735
Target:  5'- --gGCCUccacgucGCGGCCAGucucuUUGGCCCAGu -3'
miRNA:   3'- cuaCGGGa------UGCCGGUU-----GACCGGGUUc -5'
20778 3' -57.4 NC_004689.1 + 51271 0.66 0.617314
Target:  5'- -cUGCUgguucGCGGCCAACgUGGUCCAGu -3'
miRNA:   3'- cuACGGga---UGCCGGUUG-ACCGGGUUc -5'
20778 3' -57.4 NC_004689.1 + 48883 0.66 0.60652
Target:  5'- uGUGCCUcggcggcacgUGCGGCCAuccGCUGaGCCUg-- -3'
miRNA:   3'- cUACGGG----------AUGCCGGU---UGAC-CGGGuuc -5'
20778 3' -57.4 NC_004689.1 + 11421 0.67 0.56364
Target:  5'- uGAUGCCCacCGGCagaacgCggUUGGCCUGAGu -3'
miRNA:   3'- -CUACGGGauGCCG------GuuGACCGGGUUC- -5'
20778 3' -57.4 NC_004689.1 + 17104 0.67 0.542489
Target:  5'- --gGCCCUGCGGUgaGGCcGGUCUGAGu -3'
miRNA:   3'- cuaCGGGAUGCCGg-UUGaCCGGGUUC- -5'
20778 3' -57.4 NC_004689.1 + 31870 0.67 0.542489
Target:  5'- -uUGCCCUguGCGGCU--CcGGCCCAu- -3'
miRNA:   3'- cuACGGGA--UGCCGGuuGaCCGGGUuc -5'
20778 3' -57.4 NC_004689.1 + 49723 0.7 0.404419
Target:  5'- -uUGCCCUugGGCgGugUguaguauucGGCCCAc- -3'
miRNA:   3'- cuACGGGAugCCGgUugA---------CCGGGUuc -5'
20778 3' -57.4 NC_004689.1 + 27349 0.71 0.369189
Target:  5'- gGAUGUCCgcaaugaacACGGCCAACUGcugcaacgccuGUCCGAGg -3'
miRNA:   3'- -CUACGGGa--------UGCCGGUUGAC-----------CGGGUUC- -5'
20778 3' -57.4 NC_004689.1 + 35223 0.73 0.265788
Target:  5'- --aGCUCUGCGGCCAAUUGGauugcaggcgaugauCCCAGa -3'
miRNA:   3'- cuaCGGGAUGCCGGUUGACC---------------GGGUUc -5'
20778 3' -57.4 NC_004689.1 + 20293 1.09 0.000739
Target:  5'- gGAUGCCCUACGGCCAACUGGCCCAAGg -3'
miRNA:   3'- -CUACGGGAUGCCGGUUGACCGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.