Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20778 | 5' | -57.2 | NC_004689.1 | + | 17391 | 0.66 | 0.67563 |
|
Target: 5'- -uCUUCGGCUGGACCUAcgccGAUGAUGUa -3' miRNA: 3'- acGAGGCCGGUCUGGGUc---UUGCUACA- -5' |
|||||||
| 20778 | 5' | -57.2 | NC_004689.1 | + | 2009 | 0.66 | 0.664941 |
|
Target: 5'- aGCaCCGGCCAGcGCCaaaagCAGAGCcuaGAUGUu -3' miRNA: 3'- aCGaGGCCGGUC-UGG-----GUCUUG---CUACA- -5' |
|||||||
| 20778 | 5' | -57.2 | NC_004689.1 | + | 2375 | 0.66 | 0.664941 |
|
Target: 5'- uUGCaUCCGaGagCAGACCCcGuGCGAUGUa -3' miRNA: 3'- -ACG-AGGC-Cg-GUCUGGGuCuUGCUACA- -5' |
|||||||
| 20778 | 5' | -57.2 | NC_004689.1 | + | 70372 | 0.68 | 0.533889 |
|
Target: 5'- cUGCcgUCCGGugucuuggccgucaCCAGGCCCAGAucgGCGuUGUa -3' miRNA: 3'- -ACG--AGGCC--------------GGUCUGGGUCU---UGCuACA- -5' |
|||||||
| 20778 | 5' | -57.2 | NC_004689.1 | + | 61977 | 0.69 | 0.456398 |
|
Target: 5'- aUGCUCCGGCCA-ACCCAuAAUcAUGg -3' miRNA: 3'- -ACGAGGCCGGUcUGGGUcUUGcUACa -5' |
|||||||
| 20778 | 5' | -57.2 | NC_004689.1 | + | 60864 | 0.72 | 0.349011 |
|
Target: 5'- cGCUCCGGCCuGA-CCAGAuCGGUc- -3' miRNA: 3'- aCGAGGCCGGuCUgGGUCUuGCUAca -5' |
|||||||
| 20778 | 5' | -57.2 | NC_004689.1 | + | 31593 | 0.76 | 0.198912 |
|
Target: 5'- aGCUCagaugcaacugggaGGCCAGACCCAGcgagggauggaaAGCGAUGg -3' miRNA: 3'- aCGAGg-------------CCGGUCUGGGUC------------UUGCUACa -5' |
|||||||
| 20778 | 5' | -57.2 | NC_004689.1 | + | 20258 | 1.07 | 0.001207 |
|
Target: 5'- gUGCUCCGGCCAGACCCAGAACGAUGUu -3' miRNA: 3'- -ACGAGGCCGGUCUGGGUCUUGCUACA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home