miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20780 5' -53.3 NC_004689.1 + 63645 0.66 0.895939
Target:  5'- uUCGAAACGUCUuugguuguGACGGUgaUGAAuUGCg -3'
miRNA:   3'- gAGCUUUGCGGGu-------CUGCCA--GCUU-GCG- -5'
20780 5' -53.3 NC_004689.1 + 2098 0.66 0.895939
Target:  5'- --gGAAACGCaaccaCCGGGCGGuggacUCGGugGUg -3'
miRNA:   3'- gagCUUUGCG-----GGUCUGCC-----AGCUugCG- -5'
20780 5' -53.3 NC_004689.1 + 32116 0.66 0.881603
Target:  5'- uUCGAgcaGAUGCUUcgGGACGG-CGAAgGCu -3'
miRNA:   3'- gAGCU---UUGCGGG--UCUGCCaGCUUgCG- -5'
20780 5' -53.3 NC_004689.1 + 38731 0.66 0.881603
Target:  5'- -aCGAAuCGCCCGauguACGGaagauUCGAugGCa -3'
miRNA:   3'- gaGCUUuGCGGGUc---UGCC-----AGCUugCG- -5'
20780 5' -53.3 NC_004689.1 + 23121 0.66 0.874062
Target:  5'- aUCG-AACGgCCAc-CGGUCGGACGg -3'
miRNA:   3'- gAGCuUUGCgGGUcuGCCAGCUUGCg -5'
20780 5' -53.3 NC_004689.1 + 10608 0.66 0.874062
Target:  5'- -gCGGAGCGCCUgccggAGACGuugCGGGCGg -3'
miRNA:   3'- gaGCUUUGCGGG-----UCUGCca-GCUUGCg -5'
20780 5' -53.3 NC_004689.1 + 59438 0.67 0.850019
Target:  5'- gUCGGuagGugGCCCAGACGcGauccUUGAGgGCu -3'
miRNA:   3'- gAGCU---UugCGGGUCUGC-C----AGCUUgCG- -5'
20780 5' -53.3 NC_004689.1 + 21034 0.67 0.841554
Target:  5'- uUUGAAGCaaGCCCAGACcuUCaAGCGCg -3'
miRNA:   3'- gAGCUUUG--CGGGUCUGccAGcUUGCG- -5'
20780 5' -53.3 NC_004689.1 + 20437 0.67 0.832878
Target:  5'- --aGAuuCGUCCAGAgucuuGUCGAACGCu -3'
miRNA:   3'- gagCUuuGCGGGUCUgc---CAGCUUGCG- -5'
20780 5' -53.3 NC_004689.1 + 68572 0.68 0.79623
Target:  5'- -gUGGGACGCCCuggucgucgguGGACccgcacucuaGGUCGGugGCc -3'
miRNA:   3'- gaGCUUUGCGGG-----------UCUG----------CCAGCUugCG- -5'
20780 5' -53.3 NC_004689.1 + 15517 0.71 0.630051
Target:  5'- uUCGAcacuCGCCCAGAUGucGUUGAuACGCu -3'
miRNA:   3'- gAGCUuu--GCGGGUCUGC--CAGCU-UGCG- -5'
20780 5' -53.3 NC_004689.1 + 20761 1.12 0.001697
Target:  5'- gCUCGAAACGCCCAGACGGUCGAACGCu -3'
miRNA:   3'- -GAGCUUUGCGGGUCUGCCAGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.