miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20782 5' -51.5 NC_004689.1 + 40568 0.66 0.93673
Target:  5'- -aGCAAcagcGCGCCuccgAuuGCGC-CACCGa -3'
miRNA:   3'- ugCGUU----CGCGGua--UuuUGCGaGUGGC- -5'
20782 5' -51.5 NC_004689.1 + 57373 0.66 0.93673
Target:  5'- aGCGUGAGCGauguuGAACGCguaACCGg -3'
miRNA:   3'- -UGCGUUCGCgguauUUUGCGag-UGGC- -5'
20782 5' -51.5 NC_004689.1 + 69141 0.66 0.93673
Target:  5'- -aGCGAGCGCCAgugGGGuugaGUUCAaCCa -3'
miRNA:   3'- ugCGUUCGCGGUa--UUUug--CGAGU-GGc -5'
20782 5' -51.5 NC_004689.1 + 8211 0.66 0.931282
Target:  5'- uUGUAAGCGCaCGUGu-GCGggUACCGg -3'
miRNA:   3'- uGCGUUCGCG-GUAUuuUGCgaGUGGC- -5'
20782 5' -51.5 NC_004689.1 + 64661 0.66 0.925549
Target:  5'- cAUGUAAGCGUCGauGAACGCcCGCa- -3'
miRNA:   3'- -UGCGUUCGCGGUauUUUGCGaGUGgc -5'
20782 5' -51.5 NC_004689.1 + 26853 0.66 0.919532
Target:  5'- uUGUAGcCGCCGUAGGAUGCUgGaCCGc -3'
miRNA:   3'- uGCGUUcGCGGUAUUUUGCGAgU-GGC- -5'
20782 5' -51.5 NC_004689.1 + 64984 0.66 0.919532
Target:  5'- uGCGaCGAGCGCaggcgAAAACGCUUgguuucagguGCCa -3'
miRNA:   3'- -UGC-GUUCGCGgua--UUUUGCGAG----------UGGc -5'
20782 5' -51.5 NC_004689.1 + 37641 0.66 0.919532
Target:  5'- uCGCAuccacGUGCCAUu--GCGCUCAUg- -3'
miRNA:   3'- uGCGUu----CGCGGUAuuuUGCGAGUGgc -5'
20782 5' -51.5 NC_004689.1 + 43712 0.66 0.907316
Target:  5'- cGCGCGuGUGCCcgcgcgcuaGCUCACCa -3'
miRNA:   3'- -UGCGUuCGCGGuauuuug--CGAGUGGc -5'
20782 5' -51.5 NC_004689.1 + 7297 0.67 0.892638
Target:  5'- uUGCGAGCGUa--GGAACGCUUGgCCGc -3'
miRNA:   3'- uGCGUUCGCGguaUUUUGCGAGU-GGC- -5'
20782 5' -51.5 NC_004689.1 + 7850 0.67 0.869601
Target:  5'- aGCGCAgccuuucgugcuGGCGUCAUcuugugAGAGCGagccaUCACCGu -3'
miRNA:   3'- -UGCGU------------UCGCGGUA------UUUUGCg----AGUGGC- -5'
20782 5' -51.5 NC_004689.1 + 13915 0.68 0.861405
Target:  5'- cUGCAAGCGgCGUcgu-CGCccUCACCGg -3'
miRNA:   3'- uGCGUUCGCgGUAuuuuGCG--AGUGGC- -5'
20782 5' -51.5 NC_004689.1 + 43040 0.68 0.861405
Target:  5'- gUGCAAGUGCCGgggGGAGCacggcacaaaGCUCcccACCGg -3'
miRNA:   3'- uGCGUUCGCGGUa--UUUUG----------CGAG---UGGC- -5'
20782 5' -51.5 NC_004689.1 + 52029 0.68 0.83537
Target:  5'- -gGgGAGCGCCGUGuagaAGACGUUgAUCGg -3'
miRNA:   3'- ugCgUUCGCGGUAU----UUUGCGAgUGGC- -5'
20782 5' -51.5 NC_004689.1 + 59864 0.69 0.816897
Target:  5'- uGCGCGAGCGgau-----UGCUCACCGg -3'
miRNA:   3'- -UGCGUUCGCgguauuuuGCGAGUGGC- -5'
20782 5' -51.5 NC_004689.1 + 60920 0.7 0.74016
Target:  5'- gGCGCGugucgaucuguccccAGCGCCAUGA---GUUCGCCa -3'
miRNA:   3'- -UGCGU---------------UCGCGGUAUUuugCGAGUGGc -5'
20782 5' -51.5 NC_004689.1 + 40811 0.7 0.725162
Target:  5'- -aGCAGGCGUUccuUGAcGAgGCUCACCGg -3'
miRNA:   3'- ugCGUUCGCGGu--AUU-UUgCGAGUGGC- -5'
20782 5' -51.5 NC_004689.1 + 37398 0.71 0.714332
Target:  5'- uACGCccGCuuGCCGUAGAuGCGCUUGCCGc -3'
miRNA:   3'- -UGCGuuCG--CGGUAUUU-UGCGAGUGGC- -5'
20782 5' -51.5 NC_004689.1 + 21236 1.1 0.002705
Target:  5'- gACGCAAGCGCCAUAAAACGCUCACCGa -3'
miRNA:   3'- -UGCGUUCGCGGUAUUUUGCGAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.