miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20783 5' -59.2 NC_004689.1 + 40779 0.66 0.536559
Target:  5'- aUAGCCGCUGuagUGGCUCgGCUugAGCGGg -3'
miRNA:   3'- cAUCGGCGACu--GUUGGGgCGG--UCGCU- -5'
20783 5' -59.2 NC_004689.1 + 38641 0.66 0.525274
Target:  5'- -aAGCCGCUGAgAGCCggugcauuucgagCgCGCCuucuuGCGAg -3'
miRNA:   3'- caUCGGCGACUgUUGG-------------G-GCGGu----CGCU- -5'
20783 5' -59.2 NC_004689.1 + 35587 0.67 0.516109
Target:  5'- -gGGCUGCgaagGAuCAGCaCCGCUGGCGGg -3'
miRNA:   3'- caUCGGCGa---CU-GUUGgGGCGGUCGCU- -5'
20783 5' -59.2 NC_004689.1 + 33696 0.67 0.486048
Target:  5'- -aAGCUgcacaaGCUGAuCGGCUCCGgCAGCGGc -3'
miRNA:   3'- caUCGG------CGACU-GUUGGGGCgGUCGCU- -5'
20783 5' -59.2 NC_004689.1 + 14151 0.67 0.476213
Target:  5'- uUGGCCGCaaUGGCucgccaaCCCGCCAG-GAu -3'
miRNA:   3'- cAUCGGCG--ACUGuug----GGGCGGUCgCU- -5'
20783 5' -59.2 NC_004689.1 + 40203 0.67 0.466477
Target:  5'- --cGgCGCUGGCAGCCCCGC--GCu- -3'
miRNA:   3'- cauCgGCGACUGUUGGGGCGguCGcu -5'
20783 5' -59.2 NC_004689.1 + 33824 0.68 0.444486
Target:  5'- --cGCCGCUGcgcuucgaccaacuGCAACUUCGCCuGCGc -3'
miRNA:   3'- cauCGGCGAC--------------UGUUGGGGCGGuCGCu -5'
20783 5' -59.2 NC_004689.1 + 8738 0.68 0.428611
Target:  5'- -aAGCUGCUuuuccGGCGAUCuuGUCGGCGGu -3'
miRNA:   3'- caUCGGCGA-----CUGUUGGggCGGUCGCU- -5'
20783 5' -59.2 NC_004689.1 + 7977 0.69 0.375375
Target:  5'- -cGGCCuuGCgagUGGCGACagaCCCGCCAGCGc -3'
miRNA:   3'- caUCGG--CG---ACUGUUG---GGGCGGUCGCu -5'
20783 5' -59.2 NC_004689.1 + 27717 0.69 0.370303
Target:  5'- aUGGCCGaaGucaGCGAagcucagaccgucacCCCCGCCAGCGGu -3'
miRNA:   3'- cAUCGGCgaC---UGUU---------------GGGGCGGUCGCU- -5'
20783 5' -59.2 NC_004689.1 + 28853 0.7 0.334557
Target:  5'- --cGCCG-UGGCAGCCaCCGUUGGCGGg -3'
miRNA:   3'- cauCGGCgACUGUUGG-GGCGGUCGCU- -5'
20783 5' -59.2 NC_004689.1 + 10658 0.72 0.24959
Target:  5'- -aAGCUGauucacguccacaCUGGCAGCCCCGCCAGg-- -3'
miRNA:   3'- caUCGGC-------------GACUGUUGGGGCGGUCgcu -5'
20783 5' -59.2 NC_004689.1 + 63871 0.72 0.237992
Target:  5'- --cGCUcuGCUgGAUGACCCCGCCAGCu- -3'
miRNA:   3'- cauCGG--CGA-CUGUUGGGGCGGUCGcu -5'
20783 5' -59.2 NC_004689.1 + 46540 0.74 0.191035
Target:  5'- -gAGCCGUUGACGAcaaccucguccuucuCaCCCGCCAGgGAu -3'
miRNA:   3'- caUCGGCGACUGUU---------------G-GGGCGGUCgCU- -5'
20783 5' -59.2 NC_004689.1 + 53211 0.76 0.127037
Target:  5'- -cAGCCGgUucgucagcggaGGCAGCCCCGCCAGCcGAc -3'
miRNA:   3'- caUCGGCgA-----------CUGUUGGGGCGGUCG-CU- -5'
20783 5' -59.2 NC_004689.1 + 22296 1.08 0.000594
Target:  5'- gGUAGCCGCUGACAACCCCGCCAGCGAa -3'
miRNA:   3'- -CAUCGGCGACUGUUGGGGCGGUCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.