miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20785 5' -52.9 NC_004689.1 + 12731 0.66 0.89246
Target:  5'- aGACCcucGGCGUUGgggagAACgGuCGCGGGc- -3'
miRNA:   3'- -CUGG---UCGCAACa----UUGgCuGCGCCUuc -5'
20785 5' -52.9 NC_004689.1 + 13432 0.66 0.885176
Target:  5'- cGACCAGUGUcGUAGuCCaGCGUGGu-- -3'
miRNA:   3'- -CUGGUCGCAaCAUU-GGcUGCGCCuuc -5'
20785 5' -52.9 NC_004689.1 + 67632 0.66 0.885176
Target:  5'- gGugCAGCGUguccgGUGAagcCCGuugGCGGggGa -3'
miRNA:   3'- -CugGUCGCAa----CAUU---GGCug-CGCCuuC- -5'
20785 5' -52.9 NC_004689.1 + 29872 0.66 0.877634
Target:  5'- -cCCAGCGUUGgcACCGuCGCc---- -3'
miRNA:   3'- cuGGUCGCAACauUGGCuGCGccuuc -5'
20785 5' -52.9 NC_004689.1 + 22562 0.67 0.853526
Target:  5'- cGCCuGCG----GAUCGACGCGGAAa -3'
miRNA:   3'- cUGGuCGCaacaUUGGCUGCGCCUUc -5'
20785 5' -52.9 NC_004689.1 + 52443 0.67 0.827346
Target:  5'- cACCGGCGcUGgacUAGCCuGCGCGGGu- -3'
miRNA:   3'- cUGGUCGCaAC---AUUGGcUGCGCCUuc -5'
20785 5' -52.9 NC_004689.1 + 10542 0.68 0.818199
Target:  5'- uGGCCGGaGggGUGGCCGuuGcCGGggGa -3'
miRNA:   3'- -CUGGUCgCaaCAUUGGCugC-GCCuuC- -5'
20785 5' -52.9 NC_004689.1 + 8636 0.68 0.799331
Target:  5'- uGCCAGCGUUGaAACCGGCugucuGCGa--- -3'
miRNA:   3'- cUGGUCGCAACaUUGGCUG-----CGCcuuc -5'
20785 5' -52.9 NC_004689.1 + 26452 0.7 0.696337
Target:  5'- --aCGGUGUcGUAggugacguuGCCGACGCGGAAc -3'
miRNA:   3'- cugGUCGCAaCAU---------UGGCUGCGCCUUc -5'
20785 5' -52.9 NC_004689.1 + 24508 0.73 0.51215
Target:  5'- aGCCAGU--UGUAACgGACGUGGAAa -3'
miRNA:   3'- cUGGUCGcaACAUUGgCUGCGCCUUc -5'
20785 5' -52.9 NC_004689.1 + 64485 0.73 0.51215
Target:  5'- cGCCAGCGUgauucAACUGGCGUGGGAu -3'
miRNA:   3'- cUGGUCGCAaca--UUGGCUGCGCCUUc -5'
20785 5' -52.9 NC_004689.1 + 23217 1.08 0.00279
Target:  5'- uGACCAGCGUUGUAACCGACGCGGAAGu -3'
miRNA:   3'- -CUGGUCGCAACAUUGGCUGCGCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.