Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 12731 | 0.66 | 0.89246 |
Target: 5'- aGACCcucGGCGUUGgggagAACgGuCGCGGGc- -3' miRNA: 3'- -CUGG---UCGCAACa----UUGgCuGCGCCUuc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 64485 | 0.73 | 0.51215 |
Target: 5'- cGCCAGCGUgauucAACUGGCGUGGGAu -3' miRNA: 3'- cUGGUCGCAaca--UUGGCUGCGCCUUc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 24508 | 0.73 | 0.51215 |
Target: 5'- aGCCAGU--UGUAACgGACGUGGAAa -3' miRNA: 3'- cUGGUCGcaACAUUGgCUGCGCCUUc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 26452 | 0.7 | 0.696337 |
Target: 5'- --aCGGUGUcGUAggugacguuGCCGACGCGGAAc -3' miRNA: 3'- cugGUCGCAaCAU---------UGGCUGCGCCUUc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 8636 | 0.68 | 0.799331 |
Target: 5'- uGCCAGCGUUGaAACCGGCugucuGCGa--- -3' miRNA: 3'- cUGGUCGCAACaUUGGCUG-----CGCcuuc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 10542 | 0.68 | 0.818199 |
Target: 5'- uGGCCGGaGggGUGGCCGuuGcCGGggGa -3' miRNA: 3'- -CUGGUCgCaaCAUUGGCugC-GCCuuC- -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 52443 | 0.67 | 0.827346 |
Target: 5'- cACCGGCGcUGgacUAGCCuGCGCGGGu- -3' miRNA: 3'- cUGGUCGCaAC---AUUGGcUGCGCCUuc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 22562 | 0.67 | 0.853526 |
Target: 5'- cGCCuGCG----GAUCGACGCGGAAa -3' miRNA: 3'- cUGGuCGCaacaUUGGCUGCGCCUUc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 29872 | 0.66 | 0.877634 |
Target: 5'- -cCCAGCGUUGgcACCGuCGCc---- -3' miRNA: 3'- cuGGUCGCAACauUGGCuGCGccuuc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 67632 | 0.66 | 0.885176 |
Target: 5'- gGugCAGCGUguccgGUGAagcCCGuugGCGGggGa -3' miRNA: 3'- -CugGUCGCAa----CAUU---GGCug-CGCCuuC- -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 13432 | 0.66 | 0.885176 |
Target: 5'- cGACCAGUGUcGUAGuCCaGCGUGGu-- -3' miRNA: 3'- -CUGGUCGCAaCAUU-GGcUGCGCCuuc -5' |
|||||||
20785 | 5' | -52.9 | NC_004689.1 | + | 23217 | 1.08 | 0.00279 |
Target: 5'- uGACCAGCGUUGUAACCGACGCGGAAGu -3' miRNA: 3'- -CUGGUCGCAACAUUGGCUGCGCCUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home