miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20786 3' -54.5 NC_004689.1 + 60865 0.66 0.855402
Target:  5'- ---aCGCUcCGGCcugACCAgaUCGGucuuGCCGACa -3'
miRNA:   3'- ggaaGCGA-GCCG---UGGU--AGCU----UGGCUG- -5'
20786 3' -54.5 NC_004689.1 + 39402 0.66 0.838589
Target:  5'- uUCUUCGaaCUUGGCAgcgauuUCGUCGccAACCGGCu -3'
miRNA:   3'- -GGAAGC--GAGCCGU------GGUAGC--UUGGCUG- -5'
20786 3' -54.5 NC_004689.1 + 62097 0.66 0.838589
Target:  5'- aCUUguugUGCUCGGUGCgcggcucucccgCGUCGAuaACCGGCu -3'
miRNA:   3'- -GGAa---GCGAGCCGUG------------GUAGCU--UGGCUG- -5'
20786 3' -54.5 NC_004689.1 + 43139 0.66 0.820945
Target:  5'- ---gCGCUCGGCAUCGUUGuucauCUGAa -3'
miRNA:   3'- ggaaGCGAGCCGUGGUAGCuu---GGCUg -5'
20786 3' -54.5 NC_004689.1 + 51738 0.66 0.811833
Target:  5'- aUCUggUCgGCuUCGGUGCCgaGUCGAGCCGcACu -3'
miRNA:   3'- -GGA--AG-CG-AGCCGUGG--UAGCUUGGC-UG- -5'
20786 3' -54.5 NC_004689.1 + 52211 0.66 0.810911
Target:  5'- aCCUUCuucuugcgcuccgGUUCGGCGuCgGUCGGAUCGGg -3'
miRNA:   3'- -GGAAG-------------CGAGCCGU-GgUAGCUUGGCUg -5'
20786 3' -54.5 NC_004689.1 + 53921 0.67 0.80254
Target:  5'- uCCUcggUCgGCUCgGGCACCGgguaGAACaCGGCc -3'
miRNA:   3'- -GGA---AG-CGAG-CCGUGGUag--CUUG-GCUG- -5'
20786 3' -54.5 NC_004689.1 + 67117 0.67 0.793077
Target:  5'- ----aGUUCGGUGCCAcgUCGAGCUuGACg -3'
miRNA:   3'- ggaagCGAGCCGUGGU--AGCUUGG-CUG- -5'
20786 3' -54.5 NC_004689.1 + 41904 0.67 0.793077
Target:  5'- aCCUUCGCagCGGCuuCGUCGugcGCCa-- -3'
miRNA:   3'- -GGAAGCGa-GCCGugGUAGCu--UGGcug -5'
20786 3' -54.5 NC_004689.1 + 17931 0.67 0.763763
Target:  5'- aUUUCGCUCGaCACCuugCG-ACCGAa -3'
miRNA:   3'- gGAAGCGAGCcGUGGua-GCuUGGCUg -5'
20786 3' -54.5 NC_004689.1 + 291 0.68 0.721875
Target:  5'- uCCggCGUaauggauUCGGCACCAuuugUCGGAUCGGa -3'
miRNA:   3'- -GGaaGCG-------AGCCGUGGU----AGCUUGGCUg -5'
20786 3' -54.5 NC_004689.1 + 13971 0.68 0.712463
Target:  5'- uUCUUCGcCUCGGCcuugACCGgcuccgcgUCGGugACCGGCc -3'
miRNA:   3'- -GGAAGC-GAGCCG----UGGU--------AGCU--UGGCUG- -5'
20786 3' -54.5 NC_004689.1 + 13878 0.68 0.701932
Target:  5'- aCgggUCGCccUCGGCgaaAUCGUCGGugaaGCCGACg -3'
miRNA:   3'- gGa--AGCG--AGCCG---UGGUAGCU----UGGCUG- -5'
20786 3' -54.5 NC_004689.1 + 7500 0.7 0.593648
Target:  5'- gCUUaCGCUUGcGC-CCAcggaacuUCGAACCGGCg -3'
miRNA:   3'- gGAA-GCGAGC-CGuGGU-------AGCUUGGCUG- -5'
20786 3' -54.5 NC_004689.1 + 16760 0.72 0.480281
Target:  5'- uCgUUCGCgCGGCACCGauagauUCGGACCaGCa -3'
miRNA:   3'- -GgAAGCGaGCCGUGGU------AGCUUGGcUG- -5'
20786 3' -54.5 NC_004689.1 + 20946 0.81 0.156488
Target:  5'- aCCUUCggcgaGCUUGGCACCAcCGgGACCGACg -3'
miRNA:   3'- -GGAAG-----CGAGCCGUGGUaGC-UUGGCUG- -5'
20786 3' -54.5 NC_004689.1 + 23887 1.11 0.001481
Target:  5'- gCCUUCGCUCGGCACCAUCGAACCGACc -3'
miRNA:   3'- -GGAAGCGAGCCGUGGUAGCUUGGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.