miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20787 5' -55 NC_004689.1 + 13017 0.65 0.842634
Target:  5'- uGAUCGcAGCACCG-CCGcG-CUGGCg -3'
miRNA:   3'- gCUGGC-UUGUGGUaGGCuCaGACCGg -5'
20787 5' -55 NC_004689.1 + 58911 0.67 0.778743
Target:  5'- gCGACCGAugGCagaugcgAUUCGgggauGGUCgGGCCg -3'
miRNA:   3'- -GCUGGCUugUGg------UAGGC-----UCAGaCCGG- -5'
20787 5' -55 NC_004689.1 + 45749 0.67 0.768962
Target:  5'- gGGCCGAucCACCGUgCGAuuucaUCcGGCCa -3'
miRNA:   3'- gCUGGCUu-GUGGUAgGCUc----AGaCCGG- -5'
20787 5' -55 NC_004689.1 + 27743 0.67 0.768962
Target:  5'- uCGGCa-AGCACCGUCUGAaUUaGGCCa -3'
miRNA:   3'- -GCUGgcUUGUGGUAGGCUcAGaCCGG- -5'
20787 5' -55 NC_004689.1 + 28663 0.67 0.759048
Target:  5'- aCG-UCGAugAUCGauuugCCG-GUCUGGCCg -3'
miRNA:   3'- -GCuGGCUugUGGUa----GGCuCAGACCGG- -5'
20787 5' -55 NC_004689.1 + 37250 0.67 0.759048
Target:  5'- uGACCGuGACcgGCgCAUCCGuG-CUGGUCa -3'
miRNA:   3'- gCUGGC-UUG--UG-GUAGGCuCaGACCGG- -5'
20787 5' -55 NC_004689.1 + 24020 0.68 0.738862
Target:  5'- uGACCGAAgUACgAUCCGAaaauGUgccaugcuucCUGGCCc -3'
miRNA:   3'- gCUGGCUU-GUGgUAGGCU----CA----------GACCGG- -5'
20787 5' -55 NC_004689.1 + 60090 0.68 0.707845
Target:  5'- gGACCGAGCAUCugcaacgcuGUCC-AGUCcucgGGCUg -3'
miRNA:   3'- gCUGGCUUGUGG---------UAGGcUCAGa---CCGG- -5'
20787 5' -55 NC_004689.1 + 62997 0.69 0.654884
Target:  5'- uGACCGAACGuCCA-CCGAGgacCaaGCCg -3'
miRNA:   3'- gCUGGCUUGU-GGUaGGCUCa--GacCGG- -5'
20787 5' -55 NC_004689.1 + 70381 0.69 0.644193
Target:  5'- uGAUCuuGACuGCCGUCCGGuGUCUuGGCCg -3'
miRNA:   3'- gCUGGc-UUG-UGGUAGGCU-CAGA-CCGG- -5'
20787 5' -55 NC_004689.1 + 11481 0.7 0.590761
Target:  5'- uGACa--ACGCCGacgauUCCG-GUCUGGCCu -3'
miRNA:   3'- gCUGgcuUGUGGU-----AGGCuCAGACCGG- -5'
20787 5' -55 NC_004689.1 + 11704 0.7 0.56956
Target:  5'- uGACCGAuguaaACGCCGUCCGcGcCcuUGGUCg -3'
miRNA:   3'- gCUGGCU-----UGUGGUAGGCuCaG--ACCGG- -5'
20787 5' -55 NC_004689.1 + 45805 0.76 0.296817
Target:  5'- gGGCCuuGCGCUcgUCGGGUUUGGCCu -3'
miRNA:   3'- gCUGGcuUGUGGuaGGCUCAGACCGG- -5'
20787 5' -55 NC_004689.1 + 24674 1.13 0.000986
Target:  5'- uCGACCGAACACCAUCCGAGUCUGGCCg -3'
miRNA:   3'- -GCUGGCUUGUGGUAGGCUCAGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.