miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20789 5' -55.9 NC_004689.1 + 55753 0.66 0.765452
Target:  5'- cGUCAGcCGAAuC-CAGACCuGUUGCCaCCa -3'
miRNA:   3'- -CAGUC-GCUUcGaGUCUGG-CAGUGG-GG- -5'
20789 5' -55.9 NC_004689.1 + 29876 0.66 0.755437
Target:  5'- -aCAGCccAGCgUUGGcACCGUCGCCaCCa -3'
miRNA:   3'- caGUCGcuUCG-AGUC-UGGCAGUGG-GG- -5'
20789 5' -55.9 NC_004689.1 + 29312 0.67 0.679356
Target:  5'- -aCGGUGggGCaacaUCAccuucaacgauaccGACUGUCACCCa -3'
miRNA:   3'- caGUCGCuuCG----AGU--------------CUGGCAGUGGGg -5'
20789 5' -55.9 NC_004689.1 + 14072 0.67 0.66116
Target:  5'- uGUCGGUGAuGCcCAGAUCGUUugCUUc -3'
miRNA:   3'- -CAGUCGCUuCGaGUCUGGCAGugGGG- -5'
20789 5' -55.9 NC_004689.1 + 42293 0.68 0.607387
Target:  5'- -aCGGCGAccuGCUCGGGCa--CGCCCUg -3'
miRNA:   3'- caGUCGCUu--CGAGUCUGgcaGUGGGG- -5'
20789 5' -55.9 NC_004689.1 + 38498 0.69 0.575294
Target:  5'- uUCAuGaCGAGGUU---GCCGUCGCCCCa -3'
miRNA:   3'- cAGU-C-GCUUCGAgucUGGCAGUGGGG- -5'
20789 5' -55.9 NC_004689.1 + 27934 0.69 0.554109
Target:  5'- -cCAGUGAAGCUCGGAUUGaUCAgCgCg -3'
miRNA:   3'- caGUCGCUUCGAGUCUGGC-AGUgGgG- -5'
20789 5' -55.9 NC_004689.1 + 27999 0.69 0.543602
Target:  5'- -cCGGCGAAGCau-GGCCGUCugUCa -3'
miRNA:   3'- caGUCGCUUCGaguCUGGCAGugGGg -5'
20789 5' -55.9 NC_004689.1 + 37157 0.71 0.462422
Target:  5'- gGUCugAGCGAAGCUCAGuccagcGCCGgucugCGUCCCg -3'
miRNA:   3'- -CAG--UCGCUUCGAGUC------UGGCa----GUGGGG- -5'
20789 5' -55.9 NC_004689.1 + 36909 0.73 0.336917
Target:  5'- aGUCGGUGGAGCgggccucgCuGGCCugccccgGUCGCCCCa -3'
miRNA:   3'- -CAGUCGCUUCGa-------GuCUGG-------CAGUGGGG- -5'
20789 5' -55.9 NC_004689.1 + 27709 1.11 0.00091
Target:  5'- aGUCAGCGAAGCUCAGACCGUCACCCCc -3'
miRNA:   3'- -CAGUCGCUUCGAGUCUGGCAGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.