miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
20790	3'	-60.9	NC_004689.1	+	50654	0.66	0.474067
	Target:  5'- cGUUGaACUGGCACCAGUugcaguguuccccaGGGuuuuucgugacGGCCAg -3' miRNA:   3'- uCAACgUGGCCGUGGUCG--------------CCC-----------UCGGU- -5'
20790	3'	-60.9	NC_004689.1	+	1957	0.66	0.467309
	Target:  5'- gGGUUGUACUGGCcuccACCGgaccGCGaGGAccgGCCAc -3' miRNA:   3'- -UCAACGUGGCCG----UGGU----CGC-CCU---CGGU- -5'
20790	3'	-60.9	NC_004689.1	+	11148	0.66	0.466348
	Target:  5'- uGUUGgACCuuGGCcgcgucgggguugGCCGG-GGGAGCCGg -3' miRNA:   3'- uCAACgUGG--CCG-------------UGGUCgCCCUCGGU- -5'
20790	3'	-60.9	NC_004689.1	+	4123	0.67	0.376755
	Target:  5'- -cUUGUGa-GGCACCAGCuuggaaccaagaGGGAGCCGa -3' miRNA:   3'- ucAACGUggCCGUGGUCG------------CCCUCGGU- -5'
20790	3'	-60.9	NC_004689.1	+	43055	0.68	0.351182
	Target:  5'- --gUGUGCCGGUgagcagugcaaguGCCGGgGGGAGCaCGg -3' miRNA:   3'- ucaACGUGGCCG-------------UGGUCgCCCUCG-GU- -5'
20790	3'	-60.9	NC_004689.1	+	29867	0.68	0.328397
	Target:  5'- cGUUgGCACCGucgcCACCAGCGuaAGCCAc -3' miRNA:   3'- uCAA-CGUGGCc---GUGGUCGCccUCGGU- -5'
20790	3'	-60.9	NC_004689.1	+	13680	0.69	0.320797
	Target:  5'- ---aGguCUGGCGguacUCGGCGGGAGCCu -3' miRNA:   3'- ucaaCguGGCCGU----GGUCGCCCUCGGu -5'
20790	3'	-60.9	NC_004689.1	+	22705	0.7	0.245875
	Target:  5'- cAGUcUGCACCGGCcuucauGCCAGCuucGGuGCCGc -3' miRNA:   3'- -UCA-ACGUGGCCG------UGGUCGc--CCuCGGU- -5'
20790	3'	-60.9	NC_004689.1	+	50288	0.71	0.233922
	Target:  5'- cGUUGuCugUGGuCGCCGGauCGGGAGCCu -3' miRNA:   3'- uCAAC-GugGCC-GUGGUC--GCCCUCGGu -5'
20790	3'	-60.9	NC_004689.1	+	29669	1.08	0.000397
	Target:  5'- gAGUUGCACCGGCACCAGCGGGAGCCAg -3' miRNA:   3'- -UCAACGUGGCCGUGGUCGCCCUCGGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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