miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20792 5' -59.5 NC_004689.1 + 45702 0.66 0.522503
Target:  5'- aGUCUuggGUgcUACCACCAggauuGCGCCACgGGUc -3'
miRNA:   3'- -UAGG---CA--AUGGUGGU-----CGCGGUGgCCGa -5'
20792 5' -59.5 NC_004689.1 + 23188 0.66 0.51233
Target:  5'- -aCCGggACCGCCuGUGCCAC-GGaCg -3'
miRNA:   3'- uaGGCaaUGGUGGuCGCGGUGgCC-Ga -5'
20792 5' -59.5 NC_004689.1 + 29437 0.66 0.498228
Target:  5'- -aCCGUUACCGCCcuuaccaccaCCACCGGUa -3'
miRNA:   3'- uaGGCAAUGGUGGucgc------GGUGGCCGa -5'
20792 5' -59.5 NC_004689.1 + 12590 0.67 0.492237
Target:  5'- aAUUCGgUGCCACCcucGGCGCUguaACCGuGCUc -3'
miRNA:   3'- -UAGGCaAUGGUGG---UCGCGG---UGGC-CGA- -5'
20792 5' -59.5 NC_004689.1 + 29485 0.67 0.492237
Target:  5'- -aCCGc-GCCAcuguCCAGCGCCACCGcCg -3'
miRNA:   3'- uaGGCaaUGGU----GGUCGCGGUGGCcGa -5'
20792 5' -59.5 NC_004689.1 + 22100 0.67 0.492237
Target:  5'- -gCCGacUGCCagaccggauGCCuuuGCGCCACUGGCg -3'
miRNA:   3'- uaGGCa-AUGG---------UGGu--CGCGGUGGCCGa -5'
20792 5' -59.5 NC_004689.1 + 12016 0.67 0.453201
Target:  5'- gGUCCG-UGCCAUCGGCGgUGgCGGUg -3'
miRNA:   3'- -UAGGCaAUGGUGGUCGCgGUgGCCGa -5'
20792 5' -59.5 NC_004689.1 + 11101 0.68 0.397983
Target:  5'- -gCCGgaggGCCgACCGGgaGCCGCUGGCg -3'
miRNA:   3'- uaGGCaa--UGG-UGGUCg-CGGUGGCCGa -5'
20792 5' -59.5 NC_004689.1 + 53383 0.68 0.389207
Target:  5'- cAUCCcagGUUGCCcugagucuucuaGCCGGuUGUCACCGGCUc -3'
miRNA:   3'- -UAGG---CAAUGG------------UGGUC-GCGGUGGCCGA- -5'
20792 5' -59.5 NC_004689.1 + 30178 0.69 0.380559
Target:  5'- -aCCGUUcCCagACCGGCaCCGCUGGCg -3'
miRNA:   3'- uaGGCAAuGG--UGGUCGcGGUGGCCGa -5'
20792 5' -59.5 NC_004689.1 + 8650 0.69 0.363652
Target:  5'- cUUCGUgACCACC-GUGCCagcguugaaACCGGCUg -3'
miRNA:   3'- uAGGCAaUGGUGGuCGCGG---------UGGCCGA- -5'
20792 5' -59.5 NC_004689.1 + 29860 0.69 0.339283
Target:  5'- -aCCGUcGCCACCAGCguaaGCCAC-GGUa -3'
miRNA:   3'- uaGGCAaUGGUGGUCG----CGGUGgCCGa -5'
20792 5' -59.5 NC_004689.1 + 29824 0.72 0.235486
Target:  5'- -gCCGUaACCACCAcCaCCACCGGCa -3'
miRNA:   3'- uaGGCAaUGGUGGUcGcGGUGGCCGa -5'
20792 5' -59.5 NC_004689.1 + 30819 0.72 0.22961
Target:  5'- cUCCGUuaccugUACCGCCGuUGCCACCGGg- -3'
miRNA:   3'- uAGGCA------AUGGUGGUcGCGGUGGCCga -5'
20792 5' -59.5 NC_004689.1 + 49035 0.72 0.218228
Target:  5'- -cCCGgUACCACCAGUcUUACCGGCg -3'
miRNA:   3'- uaGGCaAUGGUGGUCGcGGUGGCCGa -5'
20792 5' -59.5 NC_004689.1 + 29788 0.73 0.212719
Target:  5'- -aCCGUUGgCACCAGgaCGaCCACCGGUa -3'
miRNA:   3'- uaGGCAAUgGUGGUC--GC-GGUGGCCGa -5'
20792 5' -59.5 NC_004689.1 + 30865 1.05 0.000925
Target:  5'- gAUCCGUUACCACCAGCGCCACCGGCUc -3'
miRNA:   3'- -UAGGCAAUGGUGGUCGCGGUGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.