miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20793 3' -55.3 NC_004689.1 + 28025 0.66 0.800963
Target:  5'- uCCAucGGCGGuUGCCGACGCaCAUcccGGCGa -3'
miRNA:   3'- cGGU--CCGUU-ACGGCUGUG-GUGu--CUGC- -5'
20793 3' -55.3 NC_004689.1 + 31901 0.66 0.791424
Target:  5'- -aCAGGUucAUGUCGAUGCCACcgGGGCc -3'
miRNA:   3'- cgGUCCGu-UACGGCUGUGGUG--UCUGc -5'
20793 3' -55.3 NC_004689.1 + 11627 0.66 0.761886
Target:  5'- aGCCGGuGCGcccuguGUGCCGucaGCgGCGGugGu -3'
miRNA:   3'- -CGGUC-CGU------UACGGCug-UGgUGUCugC- -5'
20793 3' -55.3 NC_004689.1 + 373 0.66 0.751768
Target:  5'- cGCCggAGGCGucuGUGCCGAUucuuggACCauuGCGGGCu -3'
miRNA:   3'- -CGG--UCCGU---UACGGCUG------UGG---UGUCUGc -5'
20793 3' -55.3 NC_004689.1 + 13812 0.67 0.741533
Target:  5'- cGUCGGGCAcUGCCGGagGCUGCGuGCGc -3'
miRNA:   3'- -CGGUCCGUuACGGCUg-UGGUGUcUGC- -5'
20793 3' -55.3 NC_004689.1 + 16699 0.67 0.73119
Target:  5'- uGCCGu-CGAUGCgGA-ACCACGGACGg -3'
miRNA:   3'- -CGGUccGUUACGgCUgUGGUGUCUGC- -5'
20793 3' -55.3 NC_004689.1 + 12202 0.67 0.73119
Target:  5'- cGUCgauGGGCAGa-CCGGCACCGCgAGGCa -3'
miRNA:   3'- -CGG---UCCGUUacGGCUGUGGUG-UCUGc -5'
20793 3' -55.3 NC_004689.1 + 11113 0.67 0.72911
Target:  5'- aGCCggAGGCuugccggaggGCCGACcgggaGCCGCuGGCGg -3'
miRNA:   3'- -CGG--UCCGuua-------CGGCUG-----UGGUGuCUGC- -5'
20793 3' -55.3 NC_004689.1 + 67060 0.67 0.720752
Target:  5'- aGUCGGcGCAuUGCCGACcCCACGuGAa- -3'
miRNA:   3'- -CGGUC-CGUuACGGCUGuGGUGU-CUgc -5'
20793 3' -55.3 NC_004689.1 + 40359 0.67 0.69963
Target:  5'- cGCCAcGGCu---CCGACGCUACAcccGGCGu -3'
miRNA:   3'- -CGGU-CCGuuacGGCUGUGGUGU---CUGC- -5'
20793 3' -55.3 NC_004689.1 + 49017 0.68 0.678255
Target:  5'- aCCGGcGCu-UGCCGAUG-CGCGGACGg -3'
miRNA:   3'- cGGUC-CGuuACGGCUGUgGUGUCUGC- -5'
20793 3' -55.3 NC_004689.1 + 51048 0.68 0.667499
Target:  5'- cGCCAGucGCAGaaCgGGCACCACAGAa- -3'
miRNA:   3'- -CGGUC--CGUUacGgCUGUGGUGUCUgc -5'
20793 3' -55.3 NC_004689.1 + 30190 0.69 0.602631
Target:  5'- aGUUGGGUGAUGaccguucccagaCCGGCACCGCuGGCGu -3'
miRNA:   3'- -CGGUCCGUUAC------------GGCUGUGGUGuCUGC- -5'
20793 3' -55.3 NC_004689.1 + 13353 0.69 0.570403
Target:  5'- cGCCAaGCug-GCCGaACugCGCGGACu -3'
miRNA:   3'- -CGGUcCGuuaCGGC-UGugGUGUCUGc -5'
20793 3' -55.3 NC_004689.1 + 63455 0.71 0.507447
Target:  5'- cGCCAGGUAcucAUGCCcGC-CUugAGGCGu -3'
miRNA:   3'- -CGGUCCGU---UACGGcUGuGGugUCUGC- -5'
20793 3' -55.3 NC_004689.1 + 21670 0.72 0.447629
Target:  5'- uGgCAGGCGGUGCCGGaggucCACCGgGGAgCGu -3'
miRNA:   3'- -CgGUCCGUUACGGCU-----GUGGUgUCU-GC- -5'
20793 3' -55.3 NC_004689.1 + 24132 0.72 0.428568
Target:  5'- uUgAGGCA-UGUCGGCACCGUAGGCGa -3'
miRNA:   3'- cGgUCCGUuACGGCUGUGGUGUCUGC- -5'
20793 3' -55.3 NC_004689.1 + 22119 0.73 0.400898
Target:  5'- gGCCAgcGGCGAagucauUGCCGACugC-CAGACc -3'
miRNA:   3'- -CGGU--CCGUU------ACGGCUGugGuGUCUGc -5'
20793 3' -55.3 NC_004689.1 + 16828 0.75 0.280709
Target:  5'- -gCGGGUA--GCCGACGCCACuGACGc -3'
miRNA:   3'- cgGUCCGUuaCGGCUGUGGUGuCUGC- -5'
20793 3' -55.3 NC_004689.1 + 31636 1.11 0.000915
Target:  5'- uGCCAGGCAAUGCCGACACCACAGACGg -3'
miRNA:   3'- -CGGUCCGUUACGGCUGUGGUGUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.