Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20795 | 5' | -52.6 | NC_004689.1 | + | 3351 | 0.66 | 0.869077 |
Target: 5'- uGgUGCAGaucguaGUACCAGuucuuuCCUUCugGCg -3' miRNA: 3'- -CgACGUUga----CGUGGUCu-----GGAAGugCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 3740 | 0.66 | 0.891974 |
Target: 5'- cCUGCGACggGUugUAaACCagUUCGCGCa -3' miRNA: 3'- cGACGUUGa-CGugGUcUGG--AAGUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 11064 | 0.67 | 0.847415 |
Target: 5'- uGCUGCGgguuguucggaucggGCUGCugCucgGGACCUuUCGaaaGCa -3' miRNA: 3'- -CGACGU---------------UGACGugG---UCUGGA-AGUg--CG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 12409 | 0.67 | 0.843941 |
Target: 5'- cGUUGUAcGCcugGUugCGGAUgUUCGCGCg -3' miRNA: 3'- -CGACGU-UGa--CGugGUCUGgAAGUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 15047 | 0.72 | 0.565594 |
Target: 5'- gGCUaGCAgaccggaccucGCUGCACCAGuCCUaucgguccauggggCACGCa -3' miRNA: 3'- -CGA-CGU-----------UGACGUGGUCuGGAa-------------GUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 15441 | 0.66 | 0.876967 |
Target: 5'- --gGCAuaugGCACCAGACCaugaggUCuCGCg -3' miRNA: 3'- cgaCGUuga-CGUGGUCUGGa-----AGuGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 16927 | 0.75 | 0.427034 |
Target: 5'- aGCgGCGACUGCACCGGAU--UCGCu- -3' miRNA: 3'- -CGaCGUUGACGUGGUCUGgaAGUGcg -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 17651 | 0.66 | 0.876967 |
Target: 5'- aCUGCGGCUGgauaaCACCAG-CCUgCACa- -3' miRNA: 3'- cGACGUUGAC-----GUGGUCuGGAaGUGcg -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 19751 | 0.68 | 0.81678 |
Target: 5'- --gGCAACcaaauccuuUGUGCCGGagacGCUUUCACGCa -3' miRNA: 3'- cgaCGUUG---------ACGUGGUC----UGGAAGUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 21054 | 0.71 | 0.638361 |
Target: 5'- aGCUGCcucguACUcagagguuugaaGCAagcCCAGACCUUCaaGCGCg -3' miRNA: 3'- -CGACGu----UGA------------CGU---GGUCUGGAAG--UGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 22103 | 0.71 | 0.638361 |
Target: 5'- aUUGcCGACUGCcagACCGGauGCCUUUGCGCc -3' miRNA: 3'- cGAC-GUUGACG---UGGUC--UGGAAGUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 22718 | 0.77 | 0.313751 |
Target: 5'- cGCUaugGCAucccaguCUGCACCGG-CCUUCAUGCc -3' miRNA: 3'- -CGA---CGUu------GACGUGGUCuGGAAGUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 22868 | 0.78 | 0.262842 |
Target: 5'- gGCUGCGAuCUGUuguuccuucgacGCCAGAUCggCACGCg -3' miRNA: 3'- -CGACGUU-GACG------------UGGUCUGGaaGUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 26301 | 0.67 | 0.843941 |
Target: 5'- aGUUGaa--UGCGCCuucGACCUUgACGCc -3' miRNA: 3'- -CGACguugACGUGGu--CUGGAAgUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 28425 | 0.74 | 0.436707 |
Target: 5'- cCUGCAACUGCGucggCAGACCUUCGacccacggaaucUGCa -3' miRNA: 3'- cGACGUUGACGUg---GUCUGGAAGU------------GCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 30239 | 0.68 | 0.80732 |
Target: 5'- cGCUGCGACcaacccUGCACCGGcuGCCgaUC-CGUu -3' miRNA: 3'- -CGACGUUG------ACGUGGUC--UGGa-AGuGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 31586 | 0.66 | 0.884602 |
Target: 5'- -aUGCAACUGggagGCCAGACCca-GCGa -3' miRNA: 3'- cgACGUUGACg---UGGUCUGGaagUGCg -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 32887 | 1 | 0.009229 |
Target: 5'- gGCUGCAACUGCA-CAGACCUUCACGCu -3' miRNA: 3'- -CGACGUUGACGUgGUCUGGAAGUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 37540 | 0.69 | 0.744942 |
Target: 5'- gGCUGC-GCUGgaauagauuccaGCCAGACCaaUACGCa -3' miRNA: 3'- -CGACGuUGACg-----------UGGUCUGGaaGUGCG- -5' |
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20795 | 5' | -52.6 | NC_004689.1 | + | 39190 | 0.66 | 0.884602 |
Target: 5'- cGCUGC-ACUGCAUCGGucgcauCgaUC-CGCa -3' miRNA: 3'- -CGACGuUGACGUGGUCu-----GgaAGuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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