miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20796 5' -55.8 NC_004689.1 + 22552 0.67 0.712866
Target:  5'- uCGACGCgGAaACCGAaagcgGCACCGGUa -3'
miRNA:   3'- uGUUGUGgCUcUGGUUg----CGUGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 60880 0.67 0.712866
Target:  5'- gGCGAUAUgcAGAUC-ACGCuCCGGCCu -3'
miRNA:   3'- -UGUUGUGgcUCUGGuUGCGuGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 43680 0.67 0.702383
Target:  5'- cACAGCGCCGuauucAUCAGCGaguccaccCACgGGCCg -3'
miRNA:   3'- -UGUUGUGGCuc---UGGUUGC--------GUGgCCGG- -5'
20796 5' -55.8 NC_004689.1 + 56763 0.67 0.691835
Target:  5'- ---cCACgCGAGACCAcuuGCGCAUCaaGCCg -3'
miRNA:   3'- uguuGUG-GCUCUGGU---UGCGUGGc-CGG- -5'
20796 5' -55.8 NC_004689.1 + 8073 0.67 0.681233
Target:  5'- cCAGCACCGcAGcaguACCGACcccuGCGCCaacagcGGCCa -3'
miRNA:   3'- uGUUGUGGC-UC----UGGUUG----CGUGG------CCGG- -5'
20796 5' -55.8 NC_004689.1 + 6628 0.68 0.670586
Target:  5'- --cGCACCGAGaACgAGCaggaucaaACCGGCCa -3'
miRNA:   3'- uguUGUGGCUC-UGgUUGcg------UGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 7888 0.68 0.670586
Target:  5'- gACGACGCUuacgcgcaGAGACCAACuGCGCCuuucGCa -3'
miRNA:   3'- -UGUUGUGG--------CUCUGGUUG-CGUGGc---CGg -5'
20796 5' -55.8 NC_004689.1 + 15076 0.68 0.669519
Target:  5'- uGCGA-GCCGGGACCAAguuuguuUGCAaCGGCUa -3'
miRNA:   3'- -UGUUgUGGCUCUGGUU-------GCGUgGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 16575 0.68 0.653484
Target:  5'- cAUAcCACCgGAuucgaggucccaguuGACCGAUGCACCacGGCCa -3'
miRNA:   3'- -UGUuGUGG-CU---------------CUGGUUGCGUGG--CCGG- -5'
20796 5' -55.8 NC_004689.1 + 20376 0.68 0.649199
Target:  5'- aACAGgcCACCGAuugccaGACCGGCGaUACCuGCCu -3'
miRNA:   3'- -UGUU--GUGGCU------CUGGUUGC-GUGGcCGG- -5'
20796 5' -55.8 NC_004689.1 + 68099 0.68 0.649199
Target:  5'- gGCAACAgCGGuagcuCCGugGCuACCGGCa -3'
miRNA:   3'- -UGUUGUgGCUcu---GGUugCG-UGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 28667 0.68 0.649199
Target:  5'- gGCAACGUCGAuGAUCGAUuuGCCGGUCu -3'
miRNA:   3'- -UGUUGUGGCU-CUGGUUGcgUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 19096 0.68 0.638479
Target:  5'- aGCAACAgguUCGAaaaccacACCAACGCA-CGGCCu -3'
miRNA:   3'- -UGUUGU---GGCUc------UGGUUGCGUgGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 30524 0.68 0.635261
Target:  5'- aGCcGCACCaccaccaccggcaaGAGGCCAAC-CACCaccacGGCCa -3'
miRNA:   3'- -UGuUGUGG--------------CUCUGGUUGcGUGG-----CCGG- -5'
20796 5' -55.8 NC_004689.1 + 57008 0.68 0.627752
Target:  5'- uCAGCGCCGugcaugcGGCCAACucgucaaaaucCACCGGCUg -3'
miRNA:   3'- uGUUGUGGCu------CUGGUUGc----------GUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 48916 0.68 0.627752
Target:  5'- uGCGACugCGcGAgCAGgGCuuCGGCCu -3'
miRNA:   3'- -UGUUGugGCuCUgGUUgCGugGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 8642 0.68 0.627752
Target:  5'- ---cCACCGuG-CCAGCGUugaaACCGGCUg -3'
miRNA:   3'- uguuGUGGCuCuGGUUGCG----UGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 23305 0.68 0.624535
Target:  5'- --cGCACC-AGAgccaguacgaccgcCCAACGCugCGGCUg -3'
miRNA:   3'- uguUGUGGcUCU--------------GGUUGCGugGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 1942 0.69 0.60632
Target:  5'- ---cCACCG-GACCGcgaGgACCGGCCa -3'
miRNA:   3'- uguuGUGGCuCUGGUug-CgUGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 43887 0.69 0.57435
Target:  5'- ---cCACCGGGugCaAGCGUAUCGuGCCu -3'
miRNA:   3'- uguuGUGGCUCugG-UUGCGUGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.