miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
20798	3'	-59.8	NC_004689.1	+	49863	0.66	0.518709
	Target:  5'- aUGUGCCCcaACGCUuCUGCGUCGg--- -3' miRNA:   3'- cACAUGGG--UGCGGcGACGCGGCaguu -5'
20798	3'	-59.8	NC_004689.1	+	40886	0.69	0.344072
	Target:  5'- -cGUACCguCGCCGUUcggaucGCGCaCGUCAGg -3' miRNA:   3'- caCAUGGguGCGGCGA------CGCG-GCAGUU- -5'
20798	3'	-59.8	NC_004689.1	+	29554	0.69	0.336125
	Target:  5'- -gGUACCCACGUCGaaaaugauCUGCGCguugggcaCGUCAGg -3' miRNA:   3'- caCAUGGGUGCGGC--------GACGCG--------GCAGUU- -5'
20798	3'	-59.8	NC_004689.1	+	18640	0.69	0.328312
	Target:  5'- cUGcGCCCAUaCCGaugaaCUGCGCCGUCAGc -3' miRNA:   3'- cACaUGGGUGcGGC-----GACGCGGCAGUU- -5'
20798	3'	-59.8	NC_004689.1	+	26066	0.72	0.232996
	Target:  5'- ---cGCCCAUGCCGCUGCucGCUcgGUCGAa -3' miRNA:   3'- cacaUGGGUGCGGCGACG--CGG--CAGUU- -5'
20798	3'	-59.8	NC_004689.1	+	53279	0.72	0.21587
	Target:  5'- ---gACCU-CGCCGCUGuCGCCGUCGu -3' miRNA:   3'- cacaUGGGuGCGGCGAC-GCGGCAGUu -5'
20798	3'	-59.8	NC_004689.1	+	43708	0.72	0.205061
	Target:  5'- cGUGUGCCCGCGCgcuaGCUcaccacuucacaGCGCCGUa-- -3' miRNA:   3'- -CACAUGGGUGCGg---CGA------------CGCGGCAguu -5'
20798	3'	-59.8	NC_004689.1	+	34724	1.05	0.000762
	Target:  5'- cGUGUACCCACGCCGCUGCGCCGUCAAc -3' miRNA:   3'- -CACAUGGGUGCGGCGACGCGGCAGUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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