Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20799 | 5' | -56.1 | NC_004689.1 | + | 63149 | 0.66 | 0.688778 |
Target: 5'- gUAUCCguaGUCAuacGCGGuGCgAUUGCUGCGc -3' miRNA: 3'- -GUAGGaa-CGGU---CGCC-CG-UAACGACGU- -5' |
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20799 | 5' | -56.1 | NC_004689.1 | + | 12437 | 0.66 | 0.665851 |
Target: 5'- cCGUCCgUGCCguuguagAGCGGGUAgacGUUGUAc -3' miRNA: 3'- -GUAGGaACGG-------UCGCCCGUaa-CGACGU- -5' |
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20799 | 5' | -56.1 | NC_004689.1 | + | 55929 | 0.66 | 0.655977 |
Target: 5'- --gCCUUGCCAuGuCGGGCc--GCUGUg -3' miRNA: 3'- guaGGAACGGU-C-GCCCGuaaCGACGu -5' |
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20799 | 5' | -56.1 | NC_004689.1 | + | 10601 | 0.67 | 0.622977 |
Target: 5'- --gCC-UGCCGgagacguuGCGGGCggUGUUGCAg -3' miRNA: 3'- guaGGaACGGU--------CGCCCGuaACGACGU- -5' |
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20799 | 5' | -56.1 | NC_004689.1 | + | 64027 | 0.75 | 0.224163 |
Target: 5'- aGUCCUUGCCGGUcacGGGCGaUGCgcGCAc -3' miRNA: 3'- gUAGGAACGGUCG---CCCGUaACGa-CGU- -5' |
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20799 | 5' | -56.1 | NC_004689.1 | + | 35136 | 1.08 | 0.001001 |
Target: 5'- gCAUCCUUGCCAGCGGGCAUUGCUGCAu -3' miRNA: 3'- -GUAGGAACGGUCGCCCGUAACGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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