miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
208 5' -52.6 AC_000007.1 + 17563 0.68 0.601491
Target:  5'- -cGGCGACGGCGGCGgCG-GGUU-CCa -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUuCCGAuGG- -5'
208 5' -52.6 AC_000007.1 + 17655 0.66 0.728944
Target:  5'- uGGGGUggUAgcgcgcuguugGCAGCaCCAGGGUccUGCCu -3'
miRNA:   3'- -UCUCGuuGU-----------UGUCGcGGUUCCG--AUGG- -5'
208 5' -52.6 AC_000007.1 + 19225 0.69 0.498921
Target:  5'- uAGAGCGuuguaGGCAGUGCCGgaguaGGGCUuaaaaguagGCCc -3'
miRNA:   3'- -UCUCGUug---UUGUCGCGGU-----UCCGA---------UGG- -5'
208 5' -52.6 AC_000007.1 + 20803 0.67 0.648257
Target:  5'- uGAGCAugGcuucCAGCGUgGAGGCcguguuguggGCCa -3'
miRNA:   3'- uCUCGUugUu---GUCGCGgUUCCGa---------UGG- -5'
208 5' -52.6 AC_000007.1 + 21724 0.69 0.55519
Target:  5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3'
miRNA:   3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5'
208 5' -52.6 AC_000007.1 + 24381 0.67 0.671587
Target:  5'- -aAGCAucuGCAGCGCCAGuGC-GCCa -3'
miRNA:   3'- ucUCGUuguUGUCGCGGUUcCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 26290 0.67 0.64124
Target:  5'- uGGGUGGCGGCGGCGgCAGcugcagcuucuuuuuGGgUGCCa -3'
miRNA:   3'- uCUCGUUGUUGUCGCgGUU---------------CCgAUGG- -5'
208 5' -52.6 AC_000007.1 + 26522 0.69 0.543764
Target:  5'- -cGGCGAacaGGCAGUGCCGGcGGC-GCCu -3'
miRNA:   3'- ucUCGUUg--UUGUCGCGGUU-CCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 26556 1.13 0.000459
Target:  5'- aAGAGCAACAACAGCGCCAAGGCUACCg -3'
miRNA:   3'- -UCUCGUUGUUGUCGCGGUUCCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 26755 0.74 0.282848
Target:  5'- cGGcAGCAACAGCAGCGgUCAcacagaagcaaAGGCgACCg -3'
miRNA:   3'- -UC-UCGUUGUUGUCGC-GGU-----------UCCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 27980 0.67 0.65877
Target:  5'- aAGAGCAuaucgagggcccgGCGcACGGCGUCc-GGCUcACCa -3'
miRNA:   3'- -UCUCGU-------------UGU-UGUCGCGGuuCCGA-UGG- -5'
208 5' -52.6 AC_000007.1 + 29960 0.67 0.671587
Target:  5'- -aGGCGAUGACucAGUGaCGAGGCUGCa -3'
miRNA:   3'- ucUCGUUGUUG--UCGCgGUUCCGAUGg -5'
208 5' -52.6 AC_000007.1 + 33168 0.67 0.659936
Target:  5'- uGAGCAACcgcaaguugGACAGCaGCCuguGGCUcaGCa -3'
miRNA:   3'- uCUCGUUG---------UUGUCG-CGGuu-CCGA--UGg -5'
208 5' -52.6 AC_000007.1 + 33195 0.73 0.331272
Target:  5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5'
208 5' -52.6 AC_000007.1 + 33283 0.66 0.690135
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.