miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
208 5' -52.6 AC_000007.1 + 16263 0.66 0.733438
Target:  5'- cAGGGCcgccgccgcgcguugGGCGGCAGUGCCGGgucGGCgGCg -3'
miRNA:   3'- -UCUCG---------------UUGUUGUCGCGGUU---CCGaUGg -5'
208 5' -52.6 AC_000007.1 + 16256 0.68 0.613166
Target:  5'- cGGGCGGCcauGCGG-GCCGcucgaAGGCUgGCCg -3'
miRNA:   3'- uCUCGUUGu--UGUCgCGGU-----UCCGA-UGG- -5'
208 5' -52.6 AC_000007.1 + 15827 0.67 0.659936
Target:  5'- aGGGGCAGguGCGGCGUCu-GGCg--- -3'
miRNA:   3'- -UCUCGUUguUGUCGCGGuuCCGaugg -5'
208 5' -52.6 AC_000007.1 + 15578 0.66 0.694749
Target:  5'- cGGGCAACAGCucGGCGCCcaccaccggAAaGUUGCUg -3'
miRNA:   3'- uCUCGUUGUUG--UCGCGG---------UUcCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 15501 0.69 0.55519
Target:  5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3'
miRNA:   3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5'
208 5' -52.6 AC_000007.1 + 15262 0.67 0.659936
Target:  5'- gGGGGCGGCAGCuucUGCC---GCUGCCu -3'
miRNA:   3'- -UCUCGUUGUUGuc-GCGGuucCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 15062 0.67 0.62486
Target:  5'- -cGGCAACAACAGUGgCAGcGGCg--- -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUU-CCGaugg -5'
208 5' -52.6 AC_000007.1 + 14182 0.74 0.275345
Target:  5'- gAGAGCGugGugagcGCGGCGCCAGuGGCgGCg -3'
miRNA:   3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5'
208 5' -52.6 AC_000007.1 + 14066 0.68 0.613166
Target:  5'- uGGGGCGA-AGguGCGCaaacGGGUUGCCa -3'
miRNA:   3'- -UCUCGUUgUUguCGCGgu--UCCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 13967 0.68 0.582877
Target:  5'- cGGcAGCGACAGCAGCGUCcuggauuugggagggAGuGGCaACCc -3'
miRNA:   3'- -UC-UCGUUGUUGUCGCGG---------------UU-CCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 13577 0.71 0.40487
Target:  5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3'
miRNA:   3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5'
208 5' -52.6 AC_000007.1 + 13043 0.66 0.717637
Target:  5'- uAGcAGCAGCAACAgGCGCgAguuGGGCgucaGCa -3'
miRNA:   3'- -UC-UCGUUGUUGU-CGCGgU---UCCGa---UGg -5'
208 5' -52.6 AC_000007.1 + 12759 0.66 0.706234
Target:  5'- uAGuGCAACcAUGGaGCCcAGGUUGCCc -3'
miRNA:   3'- -UCuCGUUGuUGUCgCGGuUCCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 12669 0.71 0.414769
Target:  5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3'
miRNA:   3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 12431 0.66 0.706234
Target:  5'- cGGcAGCAGCcGCAG-GCCAAccGGCUcuCCg -3'
miRNA:   3'- -UC-UCGUUGuUGUCgCGGUU--CCGAu-GG- -5'
208 5' -52.6 AC_000007.1 + 11793 0.69 0.509987
Target:  5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3'
miRNA:   3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5'
208 5' -52.6 AC_000007.1 + 11711 0.7 0.47712
Target:  5'- -aAGgAACAGCuGCGCCAugagcGGCUugCu -3'
miRNA:   3'- ucUCgUUGUUGuCGCGGUu----CCGAugG- -5'
208 5' -52.6 AC_000007.1 + 11256 0.66 0.693596
Target:  5'- uGAGCGACAcccaaggguGCAGCugaagcgugacacGCgCGAGGCguacgUGCCg -3'
miRNA:   3'- uCUCGUUGU---------UGUCG-------------CG-GUUCCG-----AUGG- -5'
208 5' -52.6 AC_000007.1 + 11075 0.74 0.268001
Target:  5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3'
miRNA:   3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 10827 0.66 0.683195
Target:  5'- uAGcGCAGCAGCcgccGCGCCuggAAGGaaGCCa -3'
miRNA:   3'- -UCuCGUUGUUGu---CGCGG---UUCCgaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.