miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
208 5' -52.6 AC_000007.1 + 26755 0.74 0.282848
Target:  5'- cGGcAGCAACAGCAGCGgUCAcacagaagcaaAGGCgACCg -3'
miRNA:   3'- -UC-UCGUUGUUGUCGC-GGU-----------UCCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 33195 0.73 0.331272
Target:  5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5'
208 5' -52.6 AC_000007.1 + 9417 0.72 0.385526
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
208 5' -52.6 AC_000007.1 + 13577 0.71 0.40487
Target:  5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3'
miRNA:   3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5'
208 5' -52.6 AC_000007.1 + 15501 0.69 0.55519
Target:  5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3'
miRNA:   3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5'
208 5' -52.6 AC_000007.1 + 21724 0.69 0.55519
Target:  5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3'
miRNA:   3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5'
208 5' -52.6 AC_000007.1 + 6686 0.69 0.55519
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5'
208 5' -52.6 AC_000007.1 + 9286 0.69 0.529029
Target:  5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3'
miRNA:   3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5'
208 5' -52.6 AC_000007.1 + 8659 0.7 0.466397
Target:  5'- aGGAGCugguGCuGC-GCGCgGAGGUUGCUg -3'
miRNA:   3'- -UCUCGu---UGuUGuCGCGgUUCCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 12669 0.71 0.414769
Target:  5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3'
miRNA:   3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 29960 0.67 0.671587
Target:  5'- -aGGCGAUGACucAGUGaCGAGGCUGCa -3'
miRNA:   3'- ucUCGUUGUUG--UCGCgGUUCCGAUGg -5'
208 5' -52.6 AC_000007.1 + 5450 0.67 0.671587
Target:  5'- cAGGGCGAagacCGGCAGCGCUucaGC-ACCa -3'
miRNA:   3'- -UCUCGUU----GUUGUCGCGGuucCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 10827 0.66 0.683195
Target:  5'- uAGcGCAGCAGCcgccGCGCCuggAAGGaaGCCa -3'
miRNA:   3'- -UCuCGUUGUUGu---CGCGG---UUCCgaUGG- -5'
208 5' -52.6 AC_000007.1 + 33283 0.66 0.690135
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5'
208 5' -52.6 AC_000007.1 + 15578 0.66 0.694749
Target:  5'- cGGGCAACAGCucGGCGCCcaccaccggAAaGUUGCUg -3'
miRNA:   3'- uCUCGUUGUUG--UCGCGG---------UUcCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 12759 0.66 0.706234
Target:  5'- uAGuGCAACcAUGGaGCCcAGGUUGCCc -3'
miRNA:   3'- -UCuCGUUGuUGUCgCGGuUCCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 13043 0.66 0.717637
Target:  5'- uAGcAGCAGCAACAgGCGCgAguuGGGCgucaGCa -3'
miRNA:   3'- -UC-UCGUUGUUGU-CGCGgU---UCCGa---UGg -5'
208 5' -52.6 AC_000007.1 + 17655 0.66 0.728944
Target:  5'- uGGGGUggUAgcgcgcuguugGCAGCaCCAGGGUccUGCCu -3'
miRNA:   3'- -UCUCGuuGU-----------UGUCGcGGUUCCG--AUGG- -5'
208 5' -52.6 AC_000007.1 + 16263 0.66 0.733438
Target:  5'- cAGGGCcgccgccgcgcguugGGCGGCAGUGCCGGgucGGCgGCg -3'
miRNA:   3'- -UCUCG---------------UUGUUGUCGCGGUU---CCGaUGg -5'
208 5' -52.6 AC_000007.1 + 3836 0.71 0.424815
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.