miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
208 5' -52.6 AC_000007.1 + 3836 0.71 0.424815
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5'
208 5' -52.6 AC_000007.1 + 26290 0.67 0.64124
Target:  5'- uGGGUGGCGGCGGCGgCAGcugcagcuucuuuuuGGgUGCCa -3'
miRNA:   3'- uCUCGUUGUUGUCGCgGUU---------------CCgAUGG- -5'
208 5' -52.6 AC_000007.1 + 17309 0.68 0.601491
Target:  5'- --cGCGGCAucugcCAcCGCCGAGGCaACCg -3'
miRNA:   3'- ucuCGUUGUu----GUcGCGGUUCCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 11793 0.69 0.509987
Target:  5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3'
miRNA:   3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5'
208 5' -52.6 AC_000007.1 + 15827 0.67 0.659936
Target:  5'- aGGGGCAGguGCGGCGUCu-GGCg--- -3'
miRNA:   3'- -UCUCGUUguUGUCGCGGuuCCGaugg -5'
208 5' -52.6 AC_000007.1 + 12431 0.66 0.706234
Target:  5'- cGGcAGCAGCcGCAG-GCCAAccGGCUcuCCg -3'
miRNA:   3'- -UC-UCGUUGuUGUCgCGGUU--CCGAu-GG- -5'
208 5' -52.6 AC_000007.1 + 13967 0.68 0.582877
Target:  5'- cGGcAGCGACAGCAGCGUCcuggauuugggagggAGuGGCaACCc -3'
miRNA:   3'- -UC-UCGUUGUUGUCGCGG---------------UU-CCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 2148 0.74 0.275345
Target:  5'- aGGAGCAACAGCAGgaggaaGCCA-GGCgGCg -3'
miRNA:   3'- -UCUCGUUGUUGUCg-----CGGUuCCGaUGg -5'
208 5' -52.6 AC_000007.1 + 15501 0.69 0.55519
Target:  5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3'
miRNA:   3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5'
208 5' -52.6 AC_000007.1 + 21724 0.69 0.55519
Target:  5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3'
miRNA:   3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5'
208 5' -52.6 AC_000007.1 + 6686 0.69 0.55519
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5'
208 5' -52.6 AC_000007.1 + 9417 0.72 0.385526
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
208 5' -52.6 AC_000007.1 + 27980 0.67 0.65877
Target:  5'- aAGAGCAuaucgagggcccgGCGcACGGCGUCc-GGCUcACCa -3'
miRNA:   3'- -UCUCGU-------------UGU-UGUCGCGGuuCCGA-UGG- -5'
208 5' -52.6 AC_000007.1 + 9469 0.67 0.668096
Target:  5'- --cGCGGCGACGGCGCauggucucggugacGGCgcgGCCg -3'
miRNA:   3'- ucuCGUUGUUGUCGCGguu-----------CCGa--UGG- -5'
208 5' -52.6 AC_000007.1 + 24381 0.67 0.671587
Target:  5'- -aAGCAucuGCAGCGCCAGuGC-GCCa -3'
miRNA:   3'- ucUCGUuguUGUCGCGGUUcCGaUGG- -5'
208 5' -52.6 AC_000007.1 + 33195 0.73 0.331272
Target:  5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5'
208 5' -52.6 AC_000007.1 + 9733 0.66 0.728944
Target:  5'- cGGGCGGCAGCggguGGCGgUCGGGGUUGu- -3'
miRNA:   3'- uCUCGUUGUUG----UCGC-GGUUCCGAUgg -5'
208 5' -52.6 AC_000007.1 + 11256 0.66 0.693596
Target:  5'- uGAGCGACAcccaaggguGCAGCugaagcgugacacGCgCGAGGCguacgUGCCg -3'
miRNA:   3'- uCUCGUUGU---------UGUCG-------------CG-GUUCCG-----AUGG- -5'
208 5' -52.6 AC_000007.1 + 6822 0.66 0.706234
Target:  5'- gGGAGCGAgGAgguCGG-GaCCGAGGUUGCUa -3'
miRNA:   3'- -UCUCGUUgUU---GUCgC-GGUUCCGAUGG- -5'
208 5' -52.6 AC_000007.1 + 16325 0.66 0.706234
Target:  5'- cGAGCGgccgccGCAGCAGCcgcgGCCAuuAGuGCUAUg -3'
miRNA:   3'- uCUCGU------UGUUGUCG----CGGU--UC-CGAUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.