Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
208 | 5' | -52.6 | AC_000007.1 | + | 26556 | 1.13 | 0.000459 |
Target: 5'- aAGAGCAACAACAGCGCCAAGGCUACCg -3' miRNA: 3'- -UCUCGUUGUUGUCGCGGUUCCGAUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 11075 | 0.74 | 0.268001 |
Target: 5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3' miRNA: 3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 2148 | 0.74 | 0.275345 |
Target: 5'- aGGAGCAACAGCAGgaggaaGCCA-GGCgGCg -3' miRNA: 3'- -UCUCGUUGUUGUCg-----CGGUuCCGaUGg -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 14182 | 0.74 | 0.275345 |
Target: 5'- gAGAGCGugGugagcGCGGCGCCAGuGGCgGCg -3' miRNA: 3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 26755 | 0.74 | 0.282848 |
Target: 5'- cGGcAGCAACAGCAGCGgUCAcacagaagcaaAGGCgACCg -3' miRNA: 3'- -UC-UCGUUGUUGUCGC-GGU-----------UCCGaUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 33195 | 0.73 | 0.331272 |
Target: 5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3' miRNA: 3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 9417 | 0.72 | 0.385526 |
Target: 5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3' miRNA: 3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 13577 | 0.71 | 0.40487 |
Target: 5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3' miRNA: 3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 12669 | 0.71 | 0.414769 |
Target: 5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3' miRNA: 3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 3836 | 0.71 | 0.424815 |
Target: 5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3' miRNA: 3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 8659 | 0.7 | 0.466397 |
Target: 5'- aGGAGCugguGCuGC-GCGCgGAGGUUGCUg -3' miRNA: 3'- -UCUCGu---UGuUGuCGCGgUUCCGAUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 11711 | 0.7 | 0.47712 |
Target: 5'- -aAGgAACAGCuGCGCCAugagcGGCUugCu -3' miRNA: 3'- ucUCgUUGUUGuCGCGGUu----CCGAugG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 19225 | 0.69 | 0.498921 |
Target: 5'- uAGAGCGuuguaGGCAGUGCCGgaguaGGGCUuaaaaguagGCCc -3' miRNA: 3'- -UCUCGUug---UUGUCGCGGU-----UCCGA---------UGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 11793 | 0.69 | 0.509987 |
Target: 5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3' miRNA: 3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 9286 | 0.69 | 0.529029 |
Target: 5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3' miRNA: 3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 26522 | 0.69 | 0.543764 |
Target: 5'- -cGGCGAacaGGCAGUGCCGGcGGC-GCCu -3' miRNA: 3'- ucUCGUUg--UUGUCGCGGUU-CCGaUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 5531 | 0.69 | 0.543764 |
Target: 5'- aAGGGCaAGCuGC-GCGCCAAGG--GCCa -3' miRNA: 3'- -UCUCG-UUGuUGuCGCGGUUCCgaUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 15501 | 0.69 | 0.55519 |
Target: 5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3' miRNA: 3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 21724 | 0.69 | 0.55519 |
Target: 5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3' miRNA: 3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5' |
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208 | 5' | -52.6 | AC_000007.1 | + | 6686 | 0.69 | 0.55519 |
Target: 5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3' miRNA: 3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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