Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2080 | 3' | -63.7 | NC_001348.1 | + | 106583 | 1.11 | 0.000379 |
Target: 5'- gUCUCCUCCGCCCGGACGCCGAGCGGCg -3' miRNA: 3'- -AGAGGAGGCGGGCCUGCGGCUCGCCG- -5' |
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2080 | 3' | -63.7 | NC_001348.1 | + | 123455 | 0.75 | 0.164553 |
Target: 5'- --gCCUCUGCCCGG-CGCCGGuugcugguguuggacGCGGUg -3' miRNA: 3'- agaGGAGGCGGGCCuGCGGCU---------------CGCCG- -5' |
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2080 | 3' | -63.7 | NC_001348.1 | + | 104905 | 0.71 | 0.272986 |
Target: 5'- cCUCCUCU-CCCGGGgucCGCCGGGCGc- -3' miRNA: 3'- aGAGGAGGcGGGCCU---GCGGCUCGCcg -5' |
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2080 | 3' | -63.7 | NC_001348.1 | + | 123056 | 0.66 | 0.534612 |
Target: 5'- -aUCg-CCGCUCGG-CGuCCGGGCGGa -3' miRNA: 3'- agAGgaGGCGGGCCuGC-GGCUCGCCg -5' |
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2080 | 3' | -63.7 | NC_001348.1 | + | 106736 | 0.66 | 0.534612 |
Target: 5'- -aUCg-CCGCUCGG-CGuCCGGGCGGa -3' miRNA: 3'- agAGgaGGCGGGCCuGC-GGCUCGCCg -5' |
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2080 | 3' | -63.7 | NC_001348.1 | + | 124883 | 0.67 | 0.506577 |
Target: 5'- cUCUCCcggggUCCG-CCGGGCGCCcagaaaccgggGGGgGGUu -3' miRNA: 3'- -AGAGG-----AGGCgGGCCUGCGG-----------CUCgCCG- -5' |
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2080 | 3' | -63.7 | NC_001348.1 | + | 106337 | 0.75 | 0.164553 |
Target: 5'- --gCCUCUGCCCGG-CGCCGGuugcugguguuggacGCGGUg -3' miRNA: 3'- agaGGAGGCGGGCCuGCGGCU---------------CGCCG- -5' |
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2080 | 3' | -63.7 | NC_001348.1 | + | 123209 | 1.11 | 0.000379 |
Target: 5'- gUCUCCUCCGCCCGGACGCCGAGCGGCg -3' miRNA: 3'- -AGAGGAGGCGGGCCUGCGGCUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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