Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2080 | 5' | -54.9 | NC_001348.1 | + | 20703 | 0.68 | 0.771029 |
Target: 5'- uGGGCGCgacggCGGGAUCG-GGCUuucgggUAGCGg -3' miRNA: 3'- uUCCGCG-----GCCCUAGUuUCGA------AUCGCg -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 20745 | 0.69 | 0.741264 |
Target: 5'- uGGGCGCgacggCGGGAUCGggcuuucgggAAGCggccgaggugGGCGCg -3' miRNA: 3'- uUCCGCG-----GCCCUAGU----------UUCGaa--------UCGCG- -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 20829 | 0.69 | 0.741264 |
Target: 5'- uGGGCGCgacggCGGGAUCGggcuuucgggAAGCggccgaggugGGCGCg -3' miRNA: 3'- uUCCGCG-----GCCCUAGU----------UUCGaa--------UCGCG- -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 20913 | 0.68 | 0.808807 |
Target: 5'- uGGGCGCgacggCGGGAUC-GGGCUUucgggaAGCGg -3' miRNA: 3'- uUCCGCG-----GCCCUAGuUUCGAA------UCGCg -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 20955 | 0.67 | 0.8267 |
Target: 5'- uGGGGCGacggCGGGAUCG-GGCUuucgggUAGCGg -3' miRNA: 3'- -UUCCGCg---GCCCUAGUuUCGA------AUCGCg -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 53158 | 0.66 | 0.867965 |
Target: 5'- uGAGGCaGCCcGGG-CAAGGCUUguaggccuugcaAGUGCg -3' miRNA: 3'- -UUCCG-CGGcCCUaGUUUCGAA------------UCGCG- -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 61267 | 0.66 | 0.875562 |
Target: 5'- uGGGCccGCCGGGGUgGAAug-UGGCGUu -3' miRNA: 3'- uUCCG--CGGCCCUAgUUUcgaAUCGCG- -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 97682 | 0.73 | 0.521773 |
Target: 5'- cGGGUGCCGGGAUUGAcuGUgaUGGUGCa -3' miRNA: 3'- uUCCGCGGCCCUAGUUu-CGa-AUCGCG- -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 106197 | 0.67 | 0.8267 |
Target: 5'- -cGGCGCCGGGca-GAGGCcaacCGCg -3' miRNA: 3'- uuCCGCGGCCCuagUUUCGaaucGCG- -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 106619 | 1.1 | 0.001991 |
Target: 5'- cAAGGCGCCGGGAUCAAAGCUUAGCGCa -3' miRNA: 3'- -UUCCGCGGCCCUAGUUUCGAAUCGCG- -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 123173 | 1.1 | 0.001991 |
Target: 5'- cAAGGCGCCGGGAUCAAAGCUUAGCGCa -3' miRNA: 3'- -UUCCGCGGCCCUAGUUUCGAAUCGCG- -5' |
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2080 | 5' | -54.9 | NC_001348.1 | + | 123595 | 0.67 | 0.8267 |
Target: 5'- -cGGCGCCGGGca-GAGGCcaacCGCg -3' miRNA: 3'- uuCCGCGGCCCuagUUUCGaaucGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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