Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 27155 | 0.66 | 0.990918 |
|
Target: 5'- -cGGcCUUgUUCGUCuGCGAAGCcgAACa -3' miRNA: 3'- gaCCaGAAaAAGCGGuCGUUUCG--UUG- -5' |
|||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 35649 | 0.66 | 0.987886 |
|
Target: 5'- gUGGUCUgg-UCGCCGG---GGCuGCu -3' miRNA: 3'- gACCAGAaaaAGCGGUCguuUCGuUG- -5' |
|||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 37280 | 0.66 | 0.986103 |
|
Target: 5'- -cGGUCU---UCGCgGGCuuGGguGCg -3' miRNA: 3'- gaCCAGAaaaAGCGgUCGuuUCguUG- -5' |
|||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 23849 | 0.67 | 0.984125 |
|
Target: 5'- cCUGGcUCguug-CGCCuGCGAuuGCAGCg -3' miRNA: 3'- -GACC-AGaaaaaGCGGuCGUUu-CGUUG- -5' |
|||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 44682 | 0.67 | 0.97607 |
|
Target: 5'- uCUGGUUUgauuugugccuuccaUUCGUgGGCGAGGCAAg -3' miRNA: 3'- -GACCAGAaa-------------AAGCGgUCGUUUCGUUg -5' |
|||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 47171 | 0.68 | 0.974033 |
|
Target: 5'- -aGG-Cga-UUCGCCuGUGAAGCGACg -3' miRNA: 3'- gaCCaGaaaAAGCGGuCGUUUCGUUG- -5' |
|||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 54202 | 0.68 | 0.959935 |
|
Target: 5'- gCUGGUCUgccaUCGaauagcaggcuCCGGCGAGuGCGGCg -3' miRNA: 3'- -GACCAGAaaa-AGC-----------GGUCGUUU-CGUUG- -5' |
|||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 53223 | 0.7 | 0.90908 |
|
Target: 5'- -cGGUCggcucggcagccggUUCGUCAGCGgAGGCAGCc -3' miRNA: 3'- gaCCAGaaa-----------AAGCGGUCGU-UUCGUUG- -5' |
|||||||
| 20801 | 5' | -47.5 | NC_004689.1 | + | 36846 | 1.1 | 0.005945 |
|
Target: 5'- cCUGGUCUUUUUCGCCAGCAAAGCAACc -3' miRNA: 3'- -GACCAGAAAAAGCGGUCGUUUCGUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home