Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 7198 | 0.67 | 0.813442 |
Target: 5'- uGCGCcuuaCGCAAUGCUGcgcggcGCuuGGCCg -3' miRNA: 3'- -UGCGc---GCGUUACGGCuuu---UGggCUGG- -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 1848 | 0.66 | 0.831547 |
Target: 5'- gGCGCGCugaucCGAUGCUGc-GGCCuCGGCUg -3' miRNA: 3'- -UGCGCGc----GUUACGGCuuUUGG-GCUGG- -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 5116 | 0.66 | 0.831547 |
Target: 5'- -aGCGUcCAAUGCgUGAGuucagaacuGAUCCGACCa -3' miRNA: 3'- ugCGCGcGUUACG-GCUU---------UUGGGCUGG- -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 19152 | 0.66 | 0.831547 |
Target: 5'- gAC-CGgGCAGUGCgaGGAACCCG-CCa -3' miRNA: 3'- -UGcGCgCGUUACGgcUUUUGGGCuGG- -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 22115 | 0.66 | 0.831547 |
Target: 5'- -aGCG-GCGAagucauUGCCGAcuGCCaGACCg -3' miRNA: 3'- ugCGCgCGUU------ACGGCUuuUGGgCUGG- -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 26989 | 0.66 | 0.831547 |
Target: 5'- cGCGCuguugcuuGCGCAucAUGCCGGAgauauAGCCCacGGCg -3' miRNA: 3'- -UGCG--------CGCGU--UACGGCUU-----UUGGG--CUGg -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 43482 | 0.66 | 0.831547 |
Target: 5'- cACGCGUggcccaguGUGAUGCCcuccaacGGACCCuGACCg -3' miRNA: 3'- -UGCGCG--------CGUUACGGcu-----UUUGGG-CUGG- -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 42192 | 0.66 | 0.840298 |
Target: 5'- uGCGuCGUGCAgcAUGUCuuGGACCgGAUCg -3' miRNA: 3'- -UGC-GCGCGU--UACGGcuUUUGGgCUGG- -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 57646 | 0.66 | 0.840298 |
Target: 5'- uAUGC-CGgGAaucUGuuGAAAACCCGGCa -3' miRNA: 3'- -UGCGcGCgUU---ACggCUUUUGGGCUGg -5' |
|||||||
20804 | 3' | -54.1 | NC_004689.1 | + | 4439 | 0.66 | 0.848836 |
Target: 5'- uGCGUGCGCugaGUCGGGAuuCCCGcagggguaucACCa -3' miRNA: 3'- -UGCGCGCGuuaCGGCUUUu-GGGC----------UGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home