Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 18290 | 0.66 | 0.982355 |
Target: 5'- aUCCGGCCAGAgagcgcACGCAccGUACGu -3' miRNA: 3'- -AGGUCGGUCUgguua-UGCGUa-UAUGU- -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 56765 | 0.66 | 0.980034 |
Target: 5'- uUCCAcGCgAGACCAcuUGCGCAUc---- -3' miRNA: 3'- -AGGU-CGgUCUGGUu-AUGCGUAuaugu -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 22853 | 0.67 | 0.968447 |
Target: 5'- uUCCuucgacGCCAGAUCGGcACGCG-AUGCGu -3' miRNA: 3'- -AGGu-----CGGUCUGGUUaUGCGUaUAUGU- -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 63852 | 0.67 | 0.964926 |
Target: 5'- gCCAGCUuGGCCGAUGCGaaaCAUG-ACGu -3' miRNA: 3'- aGGUCGGuCUGGUUAUGC---GUAUaUGU- -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 54807 | 0.67 | 0.952734 |
Target: 5'- gUCCAGUCGGAaCAGUugGCAc----- -3' miRNA: 3'- -AGGUCGGUCUgGUUAugCGUauaugu -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 49017 | 0.68 | 0.937973 |
Target: 5'- aCCGGCgCuuGCCGAUGCGCGg--ACGg -3' miRNA: 3'- aGGUCG-GucUGGUUAUGCGUauaUGU- -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 63412 | 0.68 | 0.943186 |
Target: 5'- gCCAGCCAgcGACCGuUGCGCcggAUcgGCu -3' miRNA: 3'- aGGUCGGU--CUGGUuAUGCG---UAuaUGu -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 15459 | 0.69 | 0.914145 |
Target: 5'- uUCCGGCCAcGAUCcuUGgGCAUAUgGCAc -3' miRNA: 3'- -AGGUCGGU-CUGGuuAUgCGUAUA-UGU- -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 11634 | 0.69 | 0.893165 |
Target: 5'- uUCCGGCa--GCCGGUGCGCccuGUGUGCc -3' miRNA: 3'- -AGGUCGgucUGGUUAUGCG---UAUAUGu -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 20255 | 0.7 | 0.885595 |
Target: 5'- cUCCGGCCAGAcCCAGaacgauguucUGCGCAc----- -3' miRNA: 3'- -AGGUCGGUCU-GGUU----------AUGCGUauaugu -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 47780 | 0.7 | 0.877745 |
Target: 5'- gCCAGaUCAGACCGcUugGCAUGacgGCGg -3' miRNA: 3'- aGGUC-GGUCUGGUuAugCGUAUa--UGU- -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 38931 | 0.71 | 0.805803 |
Target: 5'- gCCAGCCGcuCUGAUACGCGUcUGCGu -3' miRNA: 3'- aGGUCGGUcuGGUUAUGCGUAuAUGU- -5' |
|||||||
20805 | 5' | -48.9 | NC_004689.1 | + | 37523 | 1.1 | 0.004734 |
Target: 5'- uUCCAGCCAGACCAAUACGCAUAUACAc -3' miRNA: 3'- -AGGUCGGUCUGGUUAUGCGUAUAUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home