miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20815 3' -56.4 NC_004689.1 + 54782 0.66 0.709809
Target:  5'- ---cGUAgACCCGCCAgGgCGUUGGcUCg -3'
miRNA:   3'- cauaCGUgUGGGCGGUgC-GCGACU-AG- -5'
20815 3' -56.4 NC_004689.1 + 38065 0.66 0.699162
Target:  5'- --uUGCGCACgUCGUgauuUGCGCGCUcGAUCa -3'
miRNA:   3'- cauACGUGUG-GGCG----GUGCGCGA-CUAG- -5'
20815 3' -56.4 NC_004689.1 + 20049 0.66 0.695956
Target:  5'- ---cGCACACCCaugaagaacguaucGCCgaACGCGCgagacaGGUCg -3'
miRNA:   3'- cauaCGUGUGGG--------------CGG--UGCGCGa-----CUAG- -5'
20815 3' -56.4 NC_004689.1 + 12986 0.67 0.65605
Target:  5'- -cGUGC-CGCCCGaCCaggcguagaACGCGUcGAUCa -3'
miRNA:   3'- caUACGuGUGGGC-GG---------UGCGCGaCUAG- -5'
20815 3' -56.4 NC_004689.1 + 41034 0.67 0.640845
Target:  5'- -aGUGCAUGCCCaGCacaacggcauucaGCGCGUccUGAUCg -3'
miRNA:   3'- caUACGUGUGGG-CGg------------UGCGCG--ACUAG- -5'
20815 3' -56.4 NC_004689.1 + 16544 0.67 0.60174
Target:  5'- -gAUGCAC-CaCgGCCACGCGUggUGAUg -3'
miRNA:   3'- caUACGUGuG-GgCGGUGCGCG--ACUAg -5'
20815 3' -56.4 NC_004689.1 + 36524 0.68 0.590917
Target:  5'- -cGUGCGCGCCCGauaCCGCGCGg----- -3'
miRNA:   3'- caUACGUGUGGGC---GGUGCGCgacuag -5'
20815 3' -56.4 NC_004689.1 + 33457 0.68 0.558687
Target:  5'- ---aGCACguACCCGCCAUGCG--GGUCc -3'
miRNA:   3'- cauaCGUG--UGGGCGGUGCGCgaCUAG- -5'
20815 3' -56.4 NC_004689.1 + 60616 0.7 0.465785
Target:  5'- ---aGC-CACCCacGCCACGaCGUUGGUCc -3'
miRNA:   3'- cauaCGuGUGGG--CGGUGC-GCGACUAG- -5'
20815 3' -56.4 NC_004689.1 + 60378 0.7 0.430888
Target:  5'- -aGUGCAUugcgugucguuuccaGCCCgGUUGCGCGUUGAUCg -3'
miRNA:   3'- caUACGUG---------------UGGG-CGGUGCGCGACUAG- -5'
20815 3' -56.4 NC_004689.1 + 39963 0.7 0.427105
Target:  5'- --uUGUAUACCCGUCGCGCcguGUUGGUUu -3'
miRNA:   3'- cauACGUGUGGGCGGUGCG---CGACUAG- -5'
20815 3' -56.4 NC_004689.1 + 1865 0.71 0.399378
Target:  5'- --uUGguCGCCuUGCCcuugGCGCGCUGAUCc -3'
miRNA:   3'- cauACguGUGG-GCGG----UGCGCGACUAG- -5'
20815 3' -56.4 NC_004689.1 + 7637 0.71 0.381545
Target:  5'- uGUcgGCGCGCuuGUUgACGCGgCUGAUCu -3'
miRNA:   3'- -CAuaCGUGUGggCGG-UGCGC-GACUAG- -5'
20815 3' -56.4 NC_004689.1 + 43794 1.09 0.000861
Target:  5'- cGUAUGCACACCCGCCACGCGCUGAUCu -3'
miRNA:   3'- -CAUACGUGUGGGCGGUGCGCGACUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.