miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
20816	3'	-56.2	NC_004689.1	+	23572	0.66	0.7453
	Target:  5'- cGCCUGcGUGUUCGCuCGGCcug-CCGGa -3' miRNA:   3'- -CGGAC-CACAGGUG-GCCGuguaGGUUc -5'
20816	3'	-56.2	NC_004689.1	+	25720	0.66	0.742238
	Target:  5'- cGUCUGGcagGUCCACCgcacgaaugaacauGGCGaagaaGUCCAGa -3' miRNA:   3'- -CGGACCa--CAGGUGG--------------CCGUg----UAGGUUc -5'
20816	3'	-56.2	NC_004689.1	+	24761	0.66	0.713229
	Target:  5'- gGCaaaGGUGUCCAuCCGGCgaaagacggccugGCAUUCGAu -3' miRNA:   3'- -CGga-CCACAGGU-GGCCG-------------UGUAGGUUc -5'
20816	3'	-56.2	NC_004689.1	+	22973	0.68	0.617061
	Target:  5'- cGCCacgGGUgcGUCCACCGGUucccggcgugguuGCA-CCGGGa -3' miRNA:   3'- -CGGa--CCA--CAGGUGGCCG-------------UGUaGGUUC- -5'
20816	3'	-56.2	NC_004689.1	+	2018	0.68	0.596658
	Target:  5'- -aCUGGUGUaagCACCGGC-CAgcgCCAAa -3' miRNA:   3'- cgGACCACAg--GUGGCCGuGUa--GGUUc -5'
20816	3'	-56.2	NC_004689.1	+	29567	0.68	0.585958
	Target:  5'- cGCCU--UGUCCACCGGUacccACGUCgAAa -3' miRNA:   3'- -CGGAccACAGGUGGCCG----UGUAGgUUc -5'
20816	3'	-56.2	NC_004689.1	+	48168	0.69	0.564676
	Target:  5'- gGUCUGaGUaGUCCGCUGGCGgGuUCCAAc -3' miRNA:   3'- -CGGAC-CA-CAGGUGGCCGUgU-AGGUUc -5'
20816	3'	-56.2	NC_004689.1	+	734	0.73	0.345769
	Target:  5'- cGCCUGGUGUCCGCacuUugAUCCAu- -3' miRNA:   3'- -CGGACCACAGGUGgccGugUAGGUuc -5'
20816	3'	-56.2	NC_004689.1	+	37269	0.74	0.29951
	Target:  5'- gGCUUGGgugcgGUCUccgugaccgugACCGGCGCAUCCGu- -3' miRNA:   3'- -CGGACCa----CAGG-----------UGGCCGUGUAGGUuc -5'
20816	3'	-56.2	NC_004689.1	+	49413	1.1	0.000964
	Target:  5'- uGCCUGGUGUCCACCGGCACAUCCAAGu -3' miRNA:   3'- -CGGACCACAGGUGGCCGUGUAGGUUC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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