miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20819 3' -51.7 NC_004689.1 + 54177 0.66 0.937919
Target:  5'- uCCGGCGAgugCGgCGaaagUUGGAUCGa -3'
miRNA:   3'- -GGUCGCUaa-GCgGCcauaAGCCUAGC- -5'
20819 3' -51.7 NC_004689.1 + 41954 0.66 0.937919
Target:  5'- --cGCGGgacUUgGCCGGUGccUUCGuGGUCGg -3'
miRNA:   3'- gguCGCU---AAgCGGCCAU--AAGC-CUAGC- -5'
20819 3' -51.7 NC_004689.1 + 11079 0.68 0.8955
Target:  5'- gCUGGCGGggucugcugcUGCgGGuUGUUCGGAUCGg -3'
miRNA:   3'- -GGUCGCUaa--------GCGgCC-AUAAGCCUAGC- -5'
20819 3' -51.7 NC_004689.1 + 28611 0.68 0.887649
Target:  5'- aCAGCGcAUUCa-CGGUGUcuucgaacguaucUCGGAUCGu -3'
miRNA:   3'- gGUCGC-UAAGcgGCCAUA-------------AGCCUAGC- -5'
20819 3' -51.7 NC_004689.1 + 63408 0.68 0.873361
Target:  5'- gCCAGCGAccguugCGCCGGa--UCGGcUCu -3'
miRNA:   3'- -GGUCGCUaa----GCGGCCauaAGCCuAGc -5'
20819 3' -51.7 NC_004689.1 + 34806 0.68 0.865484
Target:  5'- gCCAGCcAUUCGCCGauuGUuUUCGGAg-- -3'
miRNA:   3'- -GGUCGcUAAGCGGC---CAuAAGCCUagc -5'
20819 3' -51.7 NC_004689.1 + 51410 0.69 0.857368
Target:  5'- aCCGGCGAa--GauGGUAUUCGcGGUCGc -3'
miRNA:   3'- -GGUCGCUaagCggCCAUAAGC-CUAGC- -5'
20819 3' -51.7 NC_004689.1 + 29473 0.69 0.857368
Target:  5'- uCCAGCGccacCGCCG-UAgcCGGGUCGg -3'
miRNA:   3'- -GGUCGCuaa-GCGGCcAUaaGCCUAGC- -5'
20819 3' -51.7 NC_004689.1 + 6997 0.69 0.84045
Target:  5'- aCUGGUGuUUCGaCCGGUGUcuguggauUCGGGUCc -3'
miRNA:   3'- -GGUCGCuAAGC-GGCCAUA--------AGCCUAGc -5'
20819 3' -51.7 NC_004689.1 + 47607 0.7 0.784842
Target:  5'- cCCAGCGAUgugucUCGUUcGUAUUCGGcgCu -3'
miRNA:   3'- -GGUCGCUA-----AGCGGcCAUAAGCCuaGc -5'
20819 3' -51.7 NC_004689.1 + 5432 0.7 0.774968
Target:  5'- aUCGGUcaGUUCcCCGGUGUUgGGAUCGa -3'
miRNA:   3'- -GGUCGc-UAAGcGGCCAUAAgCCUAGC- -5'
20819 3' -51.7 NC_004689.1 + 31087 0.8 0.29465
Target:  5'- gCCGGUGAcUUCGuuGGUGUUCGGAcuggCGg -3'
miRNA:   3'- -GGUCGCU-AAGCggCCAUAAGCCUa---GC- -5'
20819 3' -51.7 NC_004689.1 + 54056 1.12 0.00247
Target:  5'- cCCAGCGAUUCGCCGGUAUUCGGAUCGa -3'
miRNA:   3'- -GGUCGCUAAGCGGCCAUAAGCCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.