miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2082 3' -56.7 NC_001348.1 + 99113 0.66 0.854252
Target:  5'- aACCaacUGUCCuucuuCACCA-CAACCGGCc -3'
miRNA:   3'- gUGGc--GCAGGuu---GUGGUcGUUGGCCG- -5'
2082 3' -56.7 NC_001348.1 + 107351 0.66 0.854252
Target:  5'- gGCCGCGgCCGugGCUaugAGCcgucgauacGACCGGg -3'
miRNA:   3'- gUGGCGCaGGUugUGG---UCG---------UUGGCCg -5'
2082 3' -56.7 NC_001348.1 + 122441 0.66 0.854252
Target:  5'- gGCCGCGgCCGugGCUaugAGCcgucgauacGACCGGg -3'
miRNA:   3'- gUGGCGCaGGUugUGG---UCG---------UUGGCCg -5'
2082 3' -56.7 NC_001348.1 + 72390 0.66 0.846299
Target:  5'- aCACCGcCG-CUGACguACCAGUAACauauGGCg -3'
miRNA:   3'- -GUGGC-GCaGGUUG--UGGUCGUUGg---CCG- -5'
2082 3' -56.7 NC_001348.1 + 84579 0.66 0.829811
Target:  5'- gCACUGCGU--GACACUGGaauauCCGGCg -3'
miRNA:   3'- -GUGGCGCAggUUGUGGUCguu--GGCCG- -5'
2082 3' -56.7 NC_001348.1 + 32563 0.67 0.82129
Target:  5'- gACaGCuUCCAAC-CCuGUAGCCGGUg -3'
miRNA:   3'- gUGgCGcAGGUUGuGGuCGUUGGCCG- -5'
2082 3' -56.7 NC_001348.1 + 105442 0.67 0.809955
Target:  5'- aACCGUGuuccgucgcuccccUCCAACACCGucuccGCGGCCccaaaaccgGGCg -3'
miRNA:   3'- gUGGCGC--------------AGGUUGUGGU-----CGUUGG---------CCG- -5'
2082 3' -56.7 NC_001348.1 + 124350 0.67 0.809955
Target:  5'- aACCGUGuuccgucgcuccccUCCAACACCGucuccGCGGCCccaaaaccgGGCg -3'
miRNA:   3'- gUGGCGC--------------AGGUUGUGGU-----CGUUGG---------CCG- -5'
2082 3' -56.7 NC_001348.1 + 123977 0.67 0.794718
Target:  5'- gACCGgGggCCGccGgGCCGGaGGCCGGCg -3'
miRNA:   3'- gUGGCgCa-GGU--UgUGGUCgUUGGCCG- -5'
2082 3' -56.7 NC_001348.1 + 105815 0.67 0.794718
Target:  5'- gACCGgGggCCGccGgGCCGGaGGCCGGCg -3'
miRNA:   3'- gUGGCgCa-GGU--UgUGGUCgUUGGCCG- -5'
2082 3' -56.7 NC_001348.1 + 123443 0.67 0.792897
Target:  5'- gGCuCGCGguuggccucugcCCGGCGCCGGUuGCUGGUg -3'
miRNA:   3'- gUG-GCGCa-----------GGUUGUGGUCGuUGGCCG- -5'
2082 3' -56.7 NC_001348.1 + 106349 0.67 0.792897
Target:  5'- gGCuCGCGguuggccucugcCCGGCGCCGGUuGCUGGUg -3'
miRNA:   3'- gUG-GCGCa-----------GGUUGUGGUCGuUGGCCG- -5'
2082 3' -56.7 NC_001348.1 + 52015 0.67 0.786476
Target:  5'- gACCGgGUCCAucauuuaaucgauuuUACCAGUuuGCCGGa -3'
miRNA:   3'- gUGGCgCAGGUu--------------GUGGUCGu-UGGCCg -5'
2082 3' -56.7 NC_001348.1 + 124131 0.67 0.785553
Target:  5'- uCGCCgGCcUCCGGC-CCGGCGGCCcccGGUc -3'
miRNA:   3'- -GUGG-CGcAGGUUGuGGUCGUUGG---CCG- -5'
2082 3' -56.7 NC_001348.1 + 105661 0.67 0.785553
Target:  5'- uCGCCgGCcUCCGGC-CCGGCGGCCcccGGUc -3'
miRNA:   3'- -GUGG-CGcAGGUUGuGGUCGUUGG---CCG- -5'
2082 3' -56.7 NC_001348.1 + 2334 0.67 0.785553
Target:  5'- aCGuuGUuUCCAACGCCAGUGG-CGGUa -3'
miRNA:   3'- -GUggCGcAGGUUGUGGUCGUUgGCCG- -5'
2082 3' -56.7 NC_001348.1 + 123704 0.68 0.727953
Target:  5'- gGCCuggGCGUCCGgucGCGCCGGgGcCCGGa -3'
miRNA:   3'- gUGG---CGCAGGU---UGUGGUCgUuGGCCg -5'
2082 3' -56.7 NC_001348.1 + 106088 0.68 0.727953
Target:  5'- gGCCuggGCGUCCGgucGCGCCGGgGcCCGGa -3'
miRNA:   3'- gUGG---CGCAGGU---UGUGGUCgUuGGCCg -5'
2082 3' -56.7 NC_001348.1 + 105542 0.68 0.718005
Target:  5'- cCGCCGaCGcauaCAGCGCCAccgacCGACCGGCc -3'
miRNA:   3'- -GUGGC-GCag--GUUGUGGUc----GUUGGCCG- -5'
2082 3' -56.7 NC_001348.1 + 124250 0.68 0.718005
Target:  5'- cCGCCGaCGcauaCAGCGCCAccgacCGACCGGCc -3'
miRNA:   3'- -GUGGC-GCag--GUUGUGGUc----GUUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.