miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20825 5' -58.7 NC_004689.1 + 16733 0.66 0.631257
Target:  5'- aCCAGCACgucGCCGCCUGaauccgaaaugaucuUGCCGuCGAu -3'
miRNA:   3'- -GGUCGUGacuCGGUGGGU---------------GCGGU-GCU- -5'
20825 5' -58.7 NC_004689.1 + 30911 0.66 0.627033
Target:  5'- aCCGGCcaACUGAaccguuGCCGCCUuuacuaccGCGCCgaagaACGAu -3'
miRNA:   3'- -GGUCG--UGACU------CGGUGGG--------UGCGG-----UGCU- -5'
20825 5' -58.7 NC_004689.1 + 20356 0.66 0.584909
Target:  5'- aCCGGCGauaccuGCCuugguucCCCACGCgGCGAg -3'
miRNA:   3'- -GGUCGUgacu--CGGu------GGGUGCGgUGCU- -5'
20825 5' -58.7 NC_004689.1 + 29872 0.66 0.583861
Target:  5'- cCCAGCGUUGGcaccgucGCCACCagcguaaGCCACGGu -3'
miRNA:   3'- -GGUCGUGACU-------CGGUGGgug----CGGUGCU- -5'
20825 5' -58.7 NC_004689.1 + 16835 0.67 0.564033
Target:  5'- uCCAGCAgcGGGUaGCCgACGCCACu- -3'
miRNA:   3'- -GGUCGUgaCUCGgUGGgUGCGGUGcu -5'
20825 5' -58.7 NC_004689.1 + 20163 0.67 0.564033
Target:  5'- aCAGCGCcGA-CCAguuUCCACGCgACGAc -3'
miRNA:   3'- gGUCGUGaCUcGGU---GGGUGCGgUGCU- -5'
20825 5' -58.7 NC_004689.1 + 65531 0.67 0.553668
Target:  5'- aCGGCGgUGucuccGGCC-UCCACGUCGCGGc -3'
miRNA:   3'- gGUCGUgAC-----UCGGuGGGUGCGGUGCU- -5'
20825 5' -58.7 NC_004689.1 + 37121 0.67 0.533116
Target:  5'- cCCGcGUGgUGAGCaCAuCCCACGCCuucGCGGu -3'
miRNA:   3'- -GGU-CGUgACUCG-GU-GGGUGCGG---UGCU- -5'
20825 5' -58.7 NC_004689.1 + 48865 0.68 0.502825
Target:  5'- gCGGCcauccGCUGAGCCugCUcCGCgCACGc -3'
miRNA:   3'- gGUCG-----UGACUCGGugGGuGCG-GUGCu -5'
20825 5' -58.7 NC_004689.1 + 35353 0.68 0.492893
Target:  5'- aUCAGgAUUGAGCuUGCCCACGuuuugaauCCACGGc -3'
miRNA:   3'- -GGUCgUGACUCG-GUGGGUGC--------GGUGCU- -5'
20825 5' -58.7 NC_004689.1 + 5624 0.68 0.473308
Target:  5'- uUCGGCACUG-GUCACauCCACGCgAcCGAu -3'
miRNA:   3'- -GGUCGUGACuCGGUG--GGUGCGgU-GCU- -5'
20825 5' -58.7 NC_004689.1 + 26087 0.69 0.426157
Target:  5'- gCGGCGCUGcaacuuucGCUucGCCCAUGCCGCu- -3'
miRNA:   3'- gGUCGUGACu-------CGG--UGGGUGCGGUGcu -5'
20825 5' -58.7 NC_004689.1 + 41916 0.7 0.390514
Target:  5'- aCCGGCAC--GGCCACCUuCGCaGCGGc -3'
miRNA:   3'- -GGUCGUGacUCGGUGGGuGCGgUGCU- -5'
20825 5' -58.7 NC_004689.1 + 13791 0.7 0.365092
Target:  5'- gCguGCGCUGAGCgagguuacgUGCCUGCGCUGCGGc -3'
miRNA:   3'- -GguCGUGACUCG---------GUGGGUGCGGUGCU- -5'
20825 5' -58.7 NC_004689.1 + 23296 0.7 0.356876
Target:  5'- gCCAGUAC-GA-CCGCCCaACGCUGCGGc -3'
miRNA:   3'- -GGUCGUGaCUcGGUGGG-UGCGGUGCU- -5'
20825 5' -58.7 NC_004689.1 + 4395 0.71 0.340837
Target:  5'- gCCAGC-UUGGGCUuugcguCCCAgGCCACGc -3'
miRNA:   3'- -GGUCGuGACUCGGu-----GGGUgCGGUGCu -5'
20825 5' -58.7 NC_004689.1 + 13405 0.72 0.288869
Target:  5'- cCCGGCAacgGAacGCCGCCCACGUCguaaACGGc -3'
miRNA:   3'- -GGUCGUga-CU--CGGUGGGUGCGG----UGCU- -5'
20825 5' -58.7 NC_004689.1 + 68579 0.73 0.2557
Target:  5'- cCCAGCAgUGGGaCGCCCugGUCGuCGGu -3'
miRNA:   3'- -GGUCGUgACUCgGUGGGugCGGU-GCU- -5'
20825 5' -58.7 NC_004689.1 + 60943 0.74 0.203926
Target:  5'- uCCGGCGCUGGuGCUGCCCAgGUgGCGc -3'
miRNA:   3'- -GGUCGUGACU-CGGUGGGUgCGgUGCu -5'
20825 5' -58.7 NC_004689.1 + 60626 1.1 0.000565
Target:  5'- cCCAGCACUGAGCCACCCACGCCACGAc -3'
miRNA:   3'- -GGUCGUGACUCGGUGGGUGCGGUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.