miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20826 5' -50.9 NC_004689.1 + 26154 0.66 0.9507
Target:  5'- -aGCUGccgaAUgGCGCGUGCGGGUGAucGg -3'
miRNA:   3'- cgUGAC----UAgUGUGCGUGUCCGCUuuC- -5'
20826 5' -50.9 NC_004689.1 + 16814 0.66 0.941121
Target:  5'- cCACUGA-CGCugGUGguGGUGAAu- -3'
miRNA:   3'- cGUGACUaGUGugCGUguCCGCUUuc -5'
20826 5' -50.9 NC_004689.1 + 43777 0.67 0.918566
Target:  5'- cGCGCUGAUCugAUGgGuCuGGUGGAc- -3'
miRNA:   3'- -CGUGACUAGugUGCgU-GuCCGCUUuc -5'
20826 5' -50.9 NC_004689.1 + 40071 0.67 0.898667
Target:  5'- uGCGCUGAaugucCGCGCGCacuucgguuuuGCcgacgaaacgaGGGCGAAGGg -3'
miRNA:   3'- -CGUGACUa----GUGUGCG-----------UG-----------UCCGCUUUC- -5'
20826 5' -50.9 NC_004689.1 + 27539 0.69 0.851565
Target:  5'- -aGCUGaAUCaACAUGCGCAGuGCGGcaGAGa -3'
miRNA:   3'- cgUGAC-UAG-UGUGCGUGUC-CGCU--UUC- -5'
20826 5' -50.9 NC_004689.1 + 4155 0.7 0.805748
Target:  5'- cGUGCUGAUCAuCAUGCGaggacGGCGAAc- -3'
miRNA:   3'- -CGUGACUAGU-GUGCGUgu---CCGCUUuc -5'
20826 5' -50.9 NC_004689.1 + 13031 0.7 0.804779
Target:  5'- aGCACccaacugcaUGAUCGCAgcaccgcCGCGCuGGCGAAu- -3'
miRNA:   3'- -CGUG---------ACUAGUGU-------GCGUGuCCGCUUuc -5'
20826 5' -50.9 NC_004689.1 + 36404 0.71 0.723301
Target:  5'- cGCACgugGaAUCGCGCuuGCAGGCGcAGGg -3'
miRNA:   3'- -CGUGa--C-UAGUGUGcgUGUCCGCuUUC- -5'
20826 5' -50.9 NC_004689.1 + 64996 0.71 0.712448
Target:  5'- cGgGCUGAaugUUGCGacgaGCGCAGGCGAAAa -3'
miRNA:   3'- -CgUGACU---AGUGUg---CGUGUCCGCUUUc -5'
20826 5' -50.9 NC_004689.1 + 5621 0.72 0.657194
Target:  5'- gGCACUGGUCACauccACGCGaccgauGGCGAc-- -3'
miRNA:   3'- -CGUGACUAGUG----UGCGUgu----CCGCUuuc -5'
20826 5' -50.9 NC_004689.1 + 61129 1.11 0.002679
Target:  5'- cGCACUGAUCACACGCACAGGCGAAAGc -3'
miRNA:   3'- -CGUGACUAGUGUGCGUGUCCGCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.