Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2083 | 5' | -54 | NC_001348.1 | + | 105836 | 1.1 | 0.002787 |
Target: 5'- gUCAAAACCCGGCAGCACGUACUGCCGg -3' miRNA: 3'- -AGUUUUGGGCCGUCGUGCAUGACGGC- -5' |
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2083 | 5' | -54 | NC_001348.1 | + | 123955 | 1.1 | 0.002787 |
Target: 5'- gUCAAAACCCGGCAGCACGUACUGCCGg -3' miRNA: 3'- -AGUUUUGGGCCGUCGUGCAUGACGGC- -5' |
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2083 | 5' | -54 | NC_001348.1 | + | 123803 | 0.86 | 0.1118 |
Target: 5'- ------aCCGGCAGUACGUGCUGCCGg -3' miRNA: 3'- aguuuugGGCCGUCGUGCAUGACGGC- -5' |
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2083 | 5' | -54 | NC_001348.1 | + | 105988 | 0.86 | 0.1118 |
Target: 5'- ------aCCGGCAGUACGUGCUGCCGg -3' miRNA: 3'- aguuuugGGCCGUCGUGCAUGACGGC- -5' |
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2083 | 5' | -54 | NC_001348.1 | + | 51150 | 0.7 | 0.770378 |
Target: 5'- gCAAGACCC-GUAGUGCGUGCU-CCa -3' miRNA: 3'- aGUUUUGGGcCGUCGUGCAUGAcGGc -5' |
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2083 | 5' | -54 | NC_001348.1 | + | 76794 | 0.68 | 0.858979 |
Target: 5'- aCGGAAUCCGGUAuaCAUGaACUGCCa -3' miRNA: 3'- aGUUUUGGGCCGUc-GUGCaUGACGGc -5' |
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2083 | 5' | -54 | NC_001348.1 | + | 2236 | 0.67 | 0.89567 |
Target: 5'- aUCAucAGCCCGGCcGCAUGU--UGCuCGa -3' miRNA: 3'- -AGUu-UUGGGCCGuCGUGCAugACG-GC- -5' |
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2083 | 5' | -54 | NC_001348.1 | + | 67939 | 0.67 | 0.89567 |
Target: 5'- gUUAAGuCCUgGGCGuGUugGUAUUGCCGa -3' miRNA: 3'- -AGUUUuGGG-CCGU-CGugCAUGACGGC- -5' |
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2083 | 5' | -54 | NC_001348.1 | + | 83999 | 0.66 | 0.936805 |
Target: 5'- ----cACCCGG-AGCACGUACUacGCg- -3' miRNA: 3'- aguuuUGGGCCgUCGUGCAUGA--CGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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