Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20831 | 5' | -51.8 | NC_004689.1 | + | 2218 | 0.66 | 0.931488 |
Target: 5'- cGCUUCGUCCagAGCGUuuuucacguCAUCGGc -3' miRNA: 3'- -CGAAGCAGG--UCGCAccucuu---GUAGCC- -5' |
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20831 | 5' | -51.8 | NC_004689.1 | + | 40231 | 0.67 | 0.911351 |
Target: 5'- aUUUCG-CCAcCGUGGAGGAUcgugcaAUCGGc -3' miRNA: 3'- cGAAGCaGGUcGCACCUCUUG------UAGCC- -5' |
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20831 | 5' | -51.8 | NC_004689.1 | + | 13419 | 0.67 | 0.898045 |
Target: 5'- ----aGUCCAGCGUGGuacccGGCAaCGGa -3' miRNA: 3'- cgaagCAGGUCGCACCuc---UUGUaGCC- -5' |
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20831 | 5' | -51.8 | NC_004689.1 | + | 55014 | 0.68 | 0.875349 |
Target: 5'- ---aCGUgCAGCGUGGAuaGAaggcauccccaacGCGUCGGc -3' miRNA: 3'- cgaaGCAgGUCGCACCU--CU-------------UGUAGCC- -5' |
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20831 | 5' | -51.8 | NC_004689.1 | + | 69232 | 0.68 | 0.86025 |
Target: 5'- aGCUUCuGUCCuGUGuUGGGGAuuucuuUCGGg -3' miRNA: 3'- -CGAAG-CAGGuCGC-ACCUCUugu---AGCC- -5' |
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20831 | 5' | -51.8 | NC_004689.1 | + | 68798 | 0.68 | 0.86025 |
Target: 5'- aCUUC--CCAGUGUGGuuGACGUUGGu -3' miRNA: 3'- cGAAGcaGGUCGCACCucUUGUAGCC- -5' |
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20831 | 5' | -51.8 | NC_004689.1 | + | 16087 | 0.74 | 0.532417 |
Target: 5'- gGCgacUCGUCCAGguacucgaacauCGUGGGGAACuucUCGGu -3' miRNA: 3'- -CGa--AGCAGGUC------------GCACCUCUUGu--AGCC- -5' |
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20831 | 5' | -51.8 | NC_004689.1 | + | 65571 | 1.13 | 0.002049 |
Target: 5'- cGCUUCGUCCAGCGUGGAGAACAUCGGc -3' miRNA: 3'- -CGAAGCAGGUCGCACCUCUUGUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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