miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20832 3' -56.8 NC_004689.1 + 6797 0.66 0.77281
Target:  5'- aCGuUCCACucCGUaucaGGGaGCGGAUUGCc -3'
miRNA:   3'- gGC-AGGUGuuGCG----CCCgUGCCUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 53722 0.66 0.77281
Target:  5'- gCCGUCaCugAGugUGCaGGCGuuGAUCGCg -3'
miRNA:   3'- -GGCAG-GugUU--GCGcCCGUgcCUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 42299 0.66 0.771847
Target:  5'- gUGUCCACGGCGaccugcuCGGGCACGcccuGAUUc- -3'
miRNA:   3'- gGCAGGUGUUGC-------GCCCGUGC----CUAGcg -5'
20832 3' -56.8 NC_004689.1 + 65520 0.66 0.743398
Target:  5'- uCCGgccUCCACGuCGCGgccagucucuuuGGCccaguGCGGAUCGUu -3'
miRNA:   3'- -GGC---AGGUGUuGCGC------------CCG-----UGCCUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 29882 0.66 0.743398
Target:  5'- aUGUCCACAGCccaGCGuuGGCACc-GUCGCc -3'
miRNA:   3'- gGCAGGUGUUG---CGC--CCGUGccUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 28619 0.67 0.686232
Target:  5'- gCCGuUCCACAGCGCauucacGGUGucuucgaacguaucuCGGAUCGUu -3'
miRNA:   3'- -GGC-AGGUGUUGCGc-----CCGU---------------GCCUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 63233 0.67 0.671642
Target:  5'- cUCGUCC-UGugGCGGGUAUguccagucgaagGGAUCGa -3'
miRNA:   3'- -GGCAGGuGUugCGCCCGUG------------CCUAGCg -5'
20832 3' -56.8 NC_004689.1 + 11071 0.68 0.619166
Target:  5'- -gGUCUGCuGCuGCGGGUuguuCGGAUCGg -3'
miRNA:   3'- ggCAGGUGuUG-CGCCCGu---GCCUAGCg -5'
20832 3' -56.8 NC_004689.1 + 36525 0.7 0.515898
Target:  5'- gCGUgCGCGcccgauaccGCGCGGGCAUacgugcguGGaAUCGCg -3'
miRNA:   3'- gGCAgGUGU---------UGCGCCCGUG--------CC-UAGCG- -5'
20832 3' -56.8 NC_004689.1 + 357 0.7 0.515898
Target:  5'- gCCGauUCUugGACcauuGCGGGCugGGGUC-Cg -3'
miRNA:   3'- -GGC--AGGugUUG----CGCCCGugCCUAGcG- -5'
20832 3' -56.8 NC_004689.1 + 32029 0.7 0.495993
Target:  5'- aCCGUCCGCAguugGCuucuCGGGCAcCGuGAUuCGCu -3'
miRNA:   3'- -GGCAGGUGU----UGc---GCCCGU-GC-CUA-GCG- -5'
20832 3' -56.8 NC_004689.1 + 10074 0.71 0.466812
Target:  5'- gCCGUCC-C-AC-CGGGCGugcCGGGUCGUa -3'
miRNA:   3'- -GGCAGGuGuUGcGCCCGU---GCCUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 50569 0.72 0.429339
Target:  5'- gUCGUCUGCGAUGCgcucgaccugacGGGCACGGuUgGCc -3'
miRNA:   3'- -GGCAGGUGUUGCG------------CCCGUGCCuAgCG- -5'
20832 3' -56.8 NC_004689.1 + 50099 0.72 0.401548
Target:  5'- -gGUCCACGACgacaauccgugGCGGGUcgaacgaguggucACGGAUCGg -3'
miRNA:   3'- ggCAGGUGUUG-----------CGCCCG-------------UGCCUAGCg -5'
20832 3' -56.8 NC_004689.1 + 35433 0.72 0.393697
Target:  5'- -gGUCCGCugcauUGCGGagcggcguugccGUACGGAUCGCg -3'
miRNA:   3'- ggCAGGUGuu---GCGCC------------CGUGCCUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 47238 0.75 0.291869
Target:  5'- -gGUCUgacuCGGCGgGGGCagucGCGGAUCGCg -3'
miRNA:   3'- ggCAGGu---GUUGCgCCCG----UGCCUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 17176 0.81 0.109996
Target:  5'- aCCGUgaCCAgGAUcgGCGGGCAgGGAUCGCu -3'
miRNA:   3'- -GGCA--GGUgUUG--CGCCCGUgCCUAGCG- -5'
20832 3' -56.8 NC_004689.1 + 66075 1.14 0.00059
Target:  5'- gCCGUCCACAACGCGGGCACGGAUCGCg -3'
miRNA:   3'- -GGCAGGUGUUGCGCCCGUGCCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.