miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20833 5' -53.2 NC_004689.1 + 35575 0.66 0.858468
Target:  5'- aUCAGCACC----GCug-GCGGGCa-- -3'
miRNA:   3'- -AGUCGUGGuuauCGuuaCGCCCGcag -5'
20833 5' -53.2 NC_004689.1 + 14089 0.66 0.849966
Target:  5'- cCAcGCACCGAUuGCAAUGUcGGUGa- -3'
miRNA:   3'- aGU-CGUGGUUAuCGUUACGcCCGCag -5'
20833 5' -53.2 NC_004689.1 + 5607 0.66 0.84123
Target:  5'- cCAcGCgACCGAUGGCGAcuuCGGGUGUa -3'
miRNA:   3'- aGU-CG-UGGUUAUCGUUac-GCCCGCAg -5'
20833 5' -53.2 NC_004689.1 + 50180 0.66 0.84123
Target:  5'- -gAGUGCCGAUGGCGAUGUagcugccgcccuGGuCGUCc -3'
miRNA:   3'- agUCGUGGUUAUCGUUACG------------CCcGCAG- -5'
20833 5' -53.2 NC_004689.1 + 18017 0.67 0.813708
Target:  5'- -gAGCACCGAgucucGCuccguuUGCaaGGGCGUCu -3'
miRNA:   3'- agUCGUGGUUau---CGuu----ACG--CCCGCAG- -5'
20833 5' -53.2 NC_004689.1 + 277 0.67 0.807983
Target:  5'- uUCGGCACCAuuugucggaucggAGCGGaauucUGCucGGCGUCg -3'
miRNA:   3'- -AGUCGUGGUua-----------UCGUU-----ACGc-CCGCAG- -5'
20833 5' -53.2 NC_004689.1 + 57009 0.67 0.77433
Target:  5'- cUCAGCGCCGu--GC-AUGCGGccaacuCGUCa -3'
miRNA:   3'- -AGUCGUGGUuauCGuUACGCCc-----GCAG- -5'
20833 5' -53.2 NC_004689.1 + 35097 0.68 0.743177
Target:  5'- aCuGUGCCAGcGGCGAUGUcGGCGUUc -3'
miRNA:   3'- aGuCGUGGUUaUCGUUACGcCCGCAG- -5'
20833 5' -53.2 NC_004689.1 + 10290 0.68 0.721812
Target:  5'- -aAGCACCu---GCAcUGCGGGUGa- -3'
miRNA:   3'- agUCGUGGuuauCGUuACGCCCGCag -5'
20833 5' -53.2 NC_004689.1 + 58915 0.7 0.644775
Target:  5'- cUCAGCgACCGAUGGCAgAUGCgauucgGGGaugGUCg -3'
miRNA:   3'- -AGUCG-UGGUUAUCGU-UACG------CCCg--CAG- -5'
20833 5' -53.2 NC_004689.1 + 26156 0.71 0.545263
Target:  5'- aUAGCuGCCgAAUGGCGcGUGCGGGUGaUCg -3'
miRNA:   3'- aGUCG-UGG-UUAUCGU-UACGCCCGC-AG- -5'
20833 5' -53.2 NC_004689.1 + 29472 0.75 0.332824
Target:  5'- cCAGCGCCAccgccGUAGCcggGuCGGGUGUCg -3'
miRNA:   3'- aGUCGUGGU-----UAUCGuuaC-GCCCGCAG- -5'
20833 5' -53.2 NC_004689.1 + 68517 1.09 0.001733
Target:  5'- cUCAGCACCAAUAGCAAUGCGGGCGUCc -3'
miRNA:   3'- -AGUCGUGGUUAUCGUUACGCCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.