miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20834 5' -53.5 NC_004689.1 + 12017 0.66 0.853729
Target:  5'- -aGGUCCGugccAUCGGCGguGGCGgUg -3'
miRNA:   3'- uaCCAGGUucu-UAGCCGUguCUGCgG- -5'
20834 5' -53.5 NC_004689.1 + 47538 0.66 0.84519
Target:  5'- uUGGUUC-GGAAaCGGUucGCAG-CGCCg -3'
miRNA:   3'- uACCAGGuUCUUaGCCG--UGUCuGCGG- -5'
20834 5' -53.5 NC_004689.1 + 50066 0.67 0.818262
Target:  5'- aGUGGUCac-GGAUCGGCAUgucaauGGUGCCa -3'
miRNA:   3'- -UACCAGguuCUUAGCCGUGu-----CUGCGG- -5'
20834 5' -53.5 NC_004689.1 + 27311 0.67 0.808881
Target:  5'- --uGUCCGAGGAUCGGaACcu-CGCCg -3'
miRNA:   3'- uacCAGGUUCUUAGCCgUGucuGCGG- -5'
20834 5' -53.5 NC_004689.1 + 41006 0.67 0.789571
Target:  5'- -cGcGUCCugaucGAGUUGGC-CGGugGCCc -3'
miRNA:   3'- uaC-CAGGuu---CUUAGCCGuGUCugCGG- -5'
20834 5' -53.5 NC_004689.1 + 14757 0.67 0.789571
Target:  5'- -gGGauUCCGcacucAGGAUUGGCGCAGuaACGCUc -3'
miRNA:   3'- uaCC--AGGU-----UCUUAGCCGUGUC--UGCGG- -5'
20834 5' -53.5 NC_004689.1 + 26493 0.67 0.789571
Target:  5'- --cGUCCA--GAUCGaCACGGACGCUa -3'
miRNA:   3'- uacCAGGUucUUAGCcGUGUCUGCGG- -5'
20834 5' -53.5 NC_004689.1 + 35709 0.67 0.779664
Target:  5'- -gGGUUCAcgggcAGGcUCGGCAgGGACggGCCa -3'
miRNA:   3'- uaCCAGGU-----UCUuAGCCGUgUCUG--CGG- -5'
20834 5' -53.5 NC_004689.1 + 54809 0.68 0.749068
Target:  5'- -cGGUCCAgucGGAacaGUUGGCACgaccguAGAccCGCCa -3'
miRNA:   3'- uaCCAGGU---UCU---UAGCCGUG------UCU--GCGG- -5'
20834 5' -53.5 NC_004689.1 + 33138 0.69 0.706661
Target:  5'- --aGUCCAGcGGA-CGGUACGGuGCGCCg -3'
miRNA:   3'- uacCAGGUU-CUUaGCCGUGUC-UGCGG- -5'
20834 5' -53.5 NC_004689.1 + 38961 0.76 0.332864
Target:  5'- -cGGUaCGAGggUCGGCAUccaugccgGGAUGCCa -3'
miRNA:   3'- uaCCAgGUUCuuAGCCGUG--------UCUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.