miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20838 5' -53.7 NC_004689.1 + 48179 0.66 0.866406
Target:  5'- gGCCCGUACGCGgucugaguagucCGCUgGCGgguuccaacgacGUGGGg -3'
miRNA:   3'- -UGGGCGUGUGCac----------GCGAaUGU------------UACCC- -5'
20838 5' -53.7 NC_004689.1 + 29337 0.66 0.853323
Target:  5'- -aCCGUAguggUACGagGCGCgaaaUACGGUGGGg -3'
miRNA:   3'- ugGGCGU----GUGCa-CGCGa---AUGUUACCC- -5'
20838 5' -53.7 NC_004689.1 + 43786 0.66 0.844848
Target:  5'- cACCCGC-CAC--GCGCUgAUcuGAUGGGu -3'
miRNA:   3'- -UGGGCGuGUGcaCGCGAaUG--UUACCC- -5'
20838 5' -53.7 NC_004689.1 + 49680 0.67 0.827245
Target:  5'- aGCCgGUuccaaaccACGCG-GCGCUUGucGUGGGa -3'
miRNA:   3'- -UGGgCG--------UGUGCaCGCGAAUguUACCC- -5'
20838 5' -53.7 NC_004689.1 + 57738 0.67 0.827245
Target:  5'- aGCCCcaACACGUGCcagucGUcaGCGGUGGGg -3'
miRNA:   3'- -UGGGcgUGUGCACG-----CGaaUGUUACCC- -5'
20838 5' -53.7 NC_004689.1 + 35506 0.67 0.799348
Target:  5'- uCCCGUccACACGUGCgauGCUU-CGccGGGa -3'
miRNA:   3'- uGGGCG--UGUGCACG---CGAAuGUuaCCC- -5'
20838 5' -53.7 NC_004689.1 + 7957 0.68 0.769902
Target:  5'- gACCCGCcaGCGCGUGcCGCUgaaAGUGu- -3'
miRNA:   3'- -UGGGCG--UGUGCAC-GCGAaugUUACcc -5'
20838 5' -53.7 NC_004689.1 + 8216 0.68 0.754689
Target:  5'- uCCCauuguaaGCGCACGUGUGCggguaccggugacUGCGcgGGGa -3'
miRNA:   3'- uGGG-------CGUGUGCACGCGa------------AUGUuaCCC- -5'
20838 5' -53.7 NC_004689.1 + 54864 0.69 0.696822
Target:  5'- -aCCGCACAgGgauucUGCGacgGCGGUGGGa -3'
miRNA:   3'- ugGGCGUGUgC-----ACGCgaaUGUUACCC- -5'
20838 5' -53.7 NC_004689.1 + 31121 0.69 0.696822
Target:  5'- uGCCC-CACACGUGCGUcUGCcGUGc- -3'
miRNA:   3'- -UGGGcGUGUGCACGCGaAUGuUACcc -5'
20838 5' -53.7 NC_004689.1 + 36412 0.75 0.344264
Target:  5'- cGCCuuCGCGCACGUggaaucGCGCUUGCAGgcgcaGGGa -3'
miRNA:   3'- -UGG--GCGUGUGCA------CGCGAAUGUUa----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.