Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20839 | 5' | -55.2 | NC_004689.1 | + | 8196 | 0.66 | 0.762878 |
|
Target: 5'- uGCGGGUACcgguGACugCGCGGG-GAGu -3' miRNA: 3'- cCGUUCGUGuu--CUGugGCGUCCgCUU- -5' |
|||||||
| 20839 | 5' | -55.2 | NC_004689.1 | + | 10300 | 0.68 | 0.622977 |
|
Target: 5'- cGGUgugacaAAGCACcu-GCACUGCGGGUGAGg -3' miRNA: 3'- -CCG------UUCGUGuucUGUGGCGUCCGCUU- -5' |
|||||||
| 20839 | 5' | -55.2 | NC_004689.1 | + | 36386 | 0.69 | 0.568256 |
|
Target: 5'- uGCAGGCGCAGGgaaucgcgucccACGCaCGCAGG-GAAu -3' miRNA: 3'- cCGUUCGUGUUC------------UGUG-GCGUCCgCUU- -5' |
|||||||
| 20839 | 5' | -55.2 | NC_004689.1 | + | 21687 | 0.69 | 0.546672 |
|
Target: 5'- aGGCu-GCACAGGG-ACCgugGCAGGCGGu -3' miRNA: 3'- -CCGuuCGUGUUCUgUGG---CGUCCGCUu -5' |
|||||||
| 20839 | 5' | -55.2 | NC_004689.1 | + | 10617 | 0.71 | 0.473579 |
|
Target: 5'- gGGCGgucugcggAGCGCcugccgGAGACGuuGCGGGCGGu -3' miRNA: 3'- -CCGU--------UCGUG------UUCUGUggCGUCCGCUu -5' |
|||||||
| 20839 | 5' | -55.2 | NC_004689.1 | + | 24130 | 0.73 | 0.328048 |
|
Target: 5'- --gAGGCAUGucGGCACCGUAGGCGAAc -3' miRNA: 3'- ccgUUCGUGUu-CUGUGGCGUCCGCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home