Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2084 | 3' | -59.7 | NC_001348.1 | + | 8675 | 1.08 | 0.001018 |
Target: 5'- uAAACACGCACCCCCAAGGAGCCGCCCu -3' miRNA: 3'- -UUUGUGCGUGGGGGUUCCUCGGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 74256 | 0.79 | 0.119394 |
Target: 5'- -----aGCGCCCCCGaugcGGGAGCCGCCa -3' miRNA: 3'- uuugugCGUGGGGGU----UCCUCGGCGGg -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 51551 | 0.74 | 0.252799 |
Target: 5'- -uGCGCGUcagaaauguaacuGCCgucgCCCGAGGAGCgGCCCa -3' miRNA: 3'- uuUGUGCG-------------UGG----GGGUUCCUCGgCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 123031 | 0.74 | 0.278573 |
Target: 5'- gGAAUACGCcgaaauCCCCCGuuuGGGGCCgGUCCg -3' miRNA: 3'- -UUUGUGCGu-----GGGGGUu--CCUCGG-CGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 106309 | 0.69 | 0.527863 |
Target: 5'- uGGACGCGgugGCCCUCGAGaGGUgGCCCa -3' miRNA: 3'- -UUUGUGCg--UGGGGGUUCcUCGgCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 123483 | 0.69 | 0.527863 |
Target: 5'- uGGACGCGgugGCCCUCGAGaGGUgGCCCa -3' miRNA: 3'- -UUUGUGCg--UGGGGGUUCcUCGgCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 5455 | 0.69 | 0.527863 |
Target: 5'- gAGACACaaAUgUCCGGGGAGCCGUUCu -3' miRNA: 3'- -UUUGUGcgUGgGGGUUCCUCGGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 63707 | 0.68 | 0.565656 |
Target: 5'- -cAUACGC-CCUCUuaacucaaacgcGGGAGCCGUCCa -3' miRNA: 3'- uuUGUGCGuGGGGGu-----------UCCUCGGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 75612 | 0.68 | 0.577745 |
Target: 5'- gAGACGCGuCGCCCCUuAGGGGauGUCUu -3' miRNA: 3'- -UUUGUGC-GUGGGGGuUCCUCggCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 105049 | 0.68 | 0.577745 |
Target: 5'- ---gGCGgACCCCgggaGAGGAgGCCaGCCCu -3' miRNA: 3'- uuugUGCgUGGGGg---UUCCU-CGG-CGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 117952 | 0.68 | 0.587862 |
Target: 5'- gGGACACGCcggACUUCCGAcuauuGGAuuGUCGCCCg -3' miRNA: 3'- -UUUGUGCG---UGGGGGUU-----CCU--CGGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 111839 | 0.68 | 0.587862 |
Target: 5'- gGGACACGCcggACUUCCGAcuauuGGAuuGUCGCCCg -3' miRNA: 3'- -UUUGUGCG---UGGGGGUU-----CCU--CGGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 90798 | 0.67 | 0.598011 |
Target: 5'- ---aACGCAg--CCGAGGAcGCCGCCCu -3' miRNA: 3'- uuugUGCGUgggGGUUCCU-CGGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 106761 | 0.67 | 0.608185 |
Target: 5'- gGAAUACGCcgaaauCCCCCGuuuGGGCCgGUCCg -3' miRNA: 3'- -UUUGUGCGu-----GGGGGUuc-CUCGG-CGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 124705 | 0.67 | 0.618377 |
Target: 5'- gGGACucCGuCACCCCCGacucugcgGGGGGCuccuccccccgCGCCCu -3' miRNA: 3'- -UUUGu-GC-GUGGGGGU--------UCCUCG-----------GCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 294 | 0.67 | 0.618377 |
Target: 5'- cAGACGCGCcCCCCCcuuacAGaAGCCGCg- -3' miRNA: 3'- -UUUGUGCGuGGGGGu----UCcUCGGCGgg -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 105087 | 0.67 | 0.618377 |
Target: 5'- gGGACucCGuCACCCCCGacucugcgGGGGGCuccuccccccgCGCCCu -3' miRNA: 3'- -UUUGu-GC-GUGGGGGU--------UCCUCG-----------GCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 104897 | 0.67 | 0.638784 |
Target: 5'- aGGGCugGCcuccuCUCCCGGGGuccgccGGgCGCCCa -3' miRNA: 3'- -UUUGugCGu----GGGGGUUCC------UCgGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 15586 | 0.67 | 0.638784 |
Target: 5'- uAAGCGCGUACCU---GGGGGCCGUUUu -3' miRNA: 3'- -UUUGUGCGUGGGgguUCCUCGGCGGG- -5' |
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2084 | 3' | -59.7 | NC_001348.1 | + | 10796 | 0.67 | 0.638784 |
Target: 5'- --cUACGCAUCCCUuuuGGGGGUguguguaGCCCu -3' miRNA: 3'- uuuGUGCGUGGGGGu--UCCUCGg------CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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