miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20842 5' -50.4 NC_004689.1 + 46093 0.66 0.961708
Target:  5'- gGAACGAugUcaaGC-GCaCCCAUCCCGGu -3'
miRNA:   3'- -CUUGCUugA---UGaUGcGGGUAGGGUUg -5'
20842 5' -50.4 NC_004689.1 + 18646 0.66 0.957751
Target:  5'- ----uGACcGCUGCGCCCAUaCCGAUg -3'
miRNA:   3'- cuugcUUGaUGAUGCGGGUAgGGUUG- -5'
20842 5' -50.4 NC_004689.1 + 40706 0.66 0.957751
Target:  5'- --cCGGGCUGCUcuuugcGCGCCuUGUCCaCGGCg -3'
miRNA:   3'- cuuGCUUGAUGA------UGCGG-GUAGG-GUUG- -5'
20842 5' -50.4 NC_004689.1 + 6087 0.67 0.939165
Target:  5'- --uCGAACUGCUGCucGCCUGcCCCAc- -3'
miRNA:   3'- cuuGCUUGAUGAUG--CGGGUaGGGUug -5'
20842 5' -50.4 NC_004689.1 + 17439 0.67 0.933809
Target:  5'- uGAACGAcCUGCU-UGCCCucugaCUCAGCg -3'
miRNA:   3'- -CUUGCUuGAUGAuGCGGGua---GGGUUG- -5'
20842 5' -50.4 NC_004689.1 + 13726 0.67 0.933809
Target:  5'- aGAGCGAGCUugU-CGUUCAaagcaUCCCGGu -3'
miRNA:   3'- -CUUGCUUGAugAuGCGGGU-----AGGGUUg -5'
20842 5' -50.4 NC_004689.1 + 19802 0.67 0.928164
Target:  5'- -uGCGAACaUGgUcagaaGCGCCCAgagcgCCCGACc -3'
miRNA:   3'- cuUGCUUG-AUgA-----UGCGGGUa----GGGUUG- -5'
20842 5' -50.4 NC_004689.1 + 65587 0.67 0.92223
Target:  5'- aGACGAACcGCgcgUGCGCUUcgUCCAGCg -3'
miRNA:   3'- cUUGCUUGaUG---AUGCGGGuaGGGUUG- -5'
20842 5' -50.4 NC_004689.1 + 63248 0.67 0.916007
Target:  5'- cAGCGcGCUACUGCcCUCGUCCUguGGCg -3'
miRNA:   3'- cUUGCuUGAUGAUGcGGGUAGGG--UUG- -5'
20842 5' -50.4 NC_004689.1 + 22671 0.67 0.916007
Target:  5'- -cGCGAGCcACUGCGCCUucgauGUCaCCGGg -3'
miRNA:   3'- cuUGCUUGaUGAUGCGGG-----UAG-GGUUg -5'
20842 5' -50.4 NC_004689.1 + 62559 0.67 0.915369
Target:  5'- aGGAUGAugUAUUGCGCCaCAUugaguuaCCCAu- -3'
miRNA:   3'- -CUUGCUugAUGAUGCGG-GUA-------GGGUug -5'
20842 5' -50.4 NC_004689.1 + 20327 0.67 0.914084
Target:  5'- cGGCGAGCUugUcgccaACGCCCAUgaucgcaccggaugCCCuACg -3'
miRNA:   3'- cUUGCUUGAugA-----UGCGGGUA--------------GGGuUG- -5'
20842 5' -50.4 NC_004689.1 + 11186 0.68 0.909496
Target:  5'- -cGCGAAUUGCUGaguauuucuUGCCCAacgCCUGACg -3'
miRNA:   3'- cuUGCUUGAUGAU---------GCGGGUa--GGGUUG- -5'
20842 5' -50.4 NC_004689.1 + 13237 0.68 0.9027
Target:  5'- cGAcCGGACgACcGCGCCCAUUCCu-- -3'
miRNA:   3'- -CUuGCUUGaUGaUGCGGGUAGGGuug -5'
20842 5' -50.4 NC_004689.1 + 63129 0.68 0.895621
Target:  5'- -uGCG-AUUGCUGCGCgCAUUCCAuGCg -3'
miRNA:   3'- cuUGCuUGAUGAUGCGgGUAGGGU-UG- -5'
20842 5' -50.4 NC_004689.1 + 51437 0.68 0.888264
Target:  5'- cGAACGGAUcgGgUGCGCCCAaggcguaCCGGCg -3'
miRNA:   3'- -CUUGCUUGa-UgAUGCGGGUag-----GGUUG- -5'
20842 5' -50.4 NC_004689.1 + 60288 0.69 0.872735
Target:  5'- -uGCGcGACcGCUuaacCGUCCGUCCCGGCa -3'
miRNA:   3'- cuUGC-UUGaUGAu---GCGGGUAGGGUUG- -5'
20842 5' -50.4 NC_004689.1 + 21431 0.7 0.80087
Target:  5'- ---aGAACgACUGCGCCCAagUCCUGAg -3'
miRNA:   3'- cuugCUUGaUGAUGCGGGU--AGGGUUg -5'
20842 5' -50.4 NC_004689.1 + 6456 0.72 0.706316
Target:  5'- cGGCGu-CUugUGCGCCCAcuuacgcgCCCAGCu -3'
miRNA:   3'- cUUGCuuGAugAUGCGGGUa-------GGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.