miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20844 5' -62.4 NC_004689.1 + 44892 0.66 0.411621
Target:  5'- gUCGUCGCUGCgGAgcuuGCGCGGAUCg -3'
miRNA:   3'- uGGCGGUGGCGgCUac--CGUGCCUGGa -5'
20844 5' -62.4 NC_004689.1 + 43784 0.67 0.364434
Target:  5'- cCCGCCACgCGCUGAucugaUGGgucugguggaccgcgUugGGACCUc -3'
miRNA:   3'- uGGCGGUG-GCGGCU-----ACC---------------GugCCUGGA- -5'
20844 5' -62.4 NC_004689.1 + 12860 0.67 0.353236
Target:  5'- aACCgGCCACCGgaaCCGAUgaGGCACaGGuACCc -3'
miRNA:   3'- -UGG-CGGUGGC---GGCUA--CCGUG-CC-UGGa -5'
20844 5' -62.4 NC_004689.1 + 28847 0.67 0.353236
Target:  5'- gGCaGCCACCGuuGGcgGGUcgccugcuGCGGGCCa -3'
miRNA:   3'- -UGgCGGUGGCggCUa-CCG--------UGCCUGGa -5'
20844 5' -62.4 NC_004689.1 + 29469 0.67 0.345388
Target:  5'- -gCGCCACCGCCGuagccGGguCGGgugucGCCa -3'
miRNA:   3'- ugGCGGUGGCGGCua---CCguGCC-----UGGa -5'
20844 5' -62.4 NC_004689.1 + 28362 0.68 0.325573
Target:  5'- uGCCGUCaucgaacuugaucguGCCGCUGGUGGCAgcCGGAgUg -3'
miRNA:   3'- -UGGCGG---------------UGGCGGCUACCGU--GCCUgGa -5'
20844 5' -62.4 NC_004689.1 + 49018 0.69 0.261066
Target:  5'- uACCGgCGCUuGCCGAU-GCGCGGACg- -3'
miRNA:   3'- -UGGCgGUGG-CGGCUAcCGUGCCUGga -5'
20844 5' -62.4 NC_004689.1 + 52726 0.7 0.254853
Target:  5'- uGCCGUCGuagaCGCCGGgugugGGCAUgGGACCg -3'
miRNA:   3'- -UGGCGGUg---GCGGCUa----CCGUG-CCUGGa -5'
20844 5' -62.4 NC_004689.1 + 66076 0.7 0.231206
Target:  5'- gGCCGuCCACaa-CGcgGGCACGGAUCg -3'
miRNA:   3'- -UGGC-GGUGgcgGCuaCCGUGCCUGGa -5'
20844 5' -62.4 NC_004689.1 + 9029 0.73 0.142946
Target:  5'- cGCCGCCuuGCCGCCuuucgccGCGCGGGCCg -3'
miRNA:   3'- -UGGCGG--UGGCGGcuac---CGUGCCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.