miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20852 5' -57.4 NC_004689.1 + 35810 0.66 0.705082
Target:  5'- cGCGGCCuuccucGUCCuGCUcGgGAaUGGGGGc -3'
miRNA:   3'- aCGCCGGuu----UAGG-CGA-CgCU-GCCUCC- -5'
20852 5' -57.4 NC_004689.1 + 10543 0.66 0.705082
Target:  5'- -uUGGCCGGAgggguggCCGUUGC--CGGGGGa -3'
miRNA:   3'- acGCCGGUUUa------GGCGACGcuGCCUCC- -5'
20852 5' -57.4 NC_004689.1 + 11390 0.66 0.652437
Target:  5'- aGUGGCgAGAUUCacgGCUGCGGCcaguGGAGc -3'
miRNA:   3'- aCGCCGgUUUAGG---CGACGCUG----CCUCc -5'
20852 5' -57.4 NC_004689.1 + 53845 0.7 0.460685
Target:  5'- cGCGGCCAGAggCCGUcccuccaugaGCGcgcagaagcggaugaACGGAGGg -3'
miRNA:   3'- aCGCCGGUUUa-GGCGa---------CGC---------------UGCCUCC- -5'
20852 5' -57.4 NC_004689.1 + 11080 0.7 0.456845
Target:  5'- cGCuGGCgGGGUCUGCUGCuGCGGGu- -3'
miRNA:   3'- aCG-CCGgUUUAGGCGACGcUGCCUcc -5'
20852 5' -57.4 NC_004689.1 + 17076 0.7 0.447321
Target:  5'- cGuUGGCCGAca-CGCUgGUGGCGGGGGu -3'
miRNA:   3'- aC-GCCGGUUuagGCGA-CGCUGCCUCC- -5'
20852 5' -57.4 NC_004689.1 + 1831 0.71 0.383933
Target:  5'- cUGCGGCC---UCgGCUGCcacccguuCGGAGGg -3'
miRNA:   3'- -ACGCCGGuuuAGgCGACGcu------GCCUCC- -5'
20852 5' -57.4 NC_004689.1 + 40152 0.72 0.350486
Target:  5'- cGCGGCgCucgcaCGCUGCGACGGuGa -3'
miRNA:   3'- aCGCCG-GuuuagGCGACGCUGCCuCc -5'
20852 5' -57.4 NC_004689.1 + 48171 0.72 0.334557
Target:  5'- cGCGGUCugaguAGUCCGCUGgcggguuccaaCGACGuGGGGu -3'
miRNA:   3'- aCGCCGGu----UUAGGCGAC-----------GCUGC-CUCC- -5'
20852 5' -57.4 NC_004689.1 + 21759 0.77 0.179463
Target:  5'- cGCGGCCuGAUCgGCUG--GCGGGGGa -3'
miRNA:   3'- aCGCCGGuUUAGgCGACgcUGCCUCC- -5'
20852 5' -57.4 NC_004689.1 + 35439 0.78 0.134063
Target:  5'- --aGGCCGGGUCCGCUGCauuGCGGAGcGg -3'
miRNA:   3'- acgCCGGUUUAGGCGACGc--UGCCUC-C- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.