Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20860 | 3' | -54.6 | NC_004689.1 | + | 22954 | 0.66 | 0.817038 |
Target: 5'- gGUUCC-C-GGCGugGuugcaccGGGACGGGCUg -3' miRNA: 3'- aUAAGGcGaCUGCugC-------UCCUGCCUGG- -5' |
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20860 | 3' | -54.6 | NC_004689.1 | + | 15863 | 0.67 | 0.790827 |
Target: 5'- -uUUCCGCUGguauccggcccagcaGCGcGCGGGGAcacgucgcgcuuguCGGACUg -3' miRNA: 3'- auAAGGCGAC---------------UGC-UGCUCCU--------------GCCUGG- -5' |
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20860 | 3' | -54.6 | NC_004689.1 | + | 48158 | 0.67 | 0.759362 |
Target: 5'- --gUCCGCUggcggguuccaacGACGugGGGuGACcGGCCu -3' miRNA: 3'- auaAGGCGA-------------CUGCugCUC-CUGcCUGG- -5' |
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20860 | 3' | -54.6 | NC_004689.1 | + | 40046 | 0.68 | 0.729731 |
Target: 5'- gGUUuuGCcGACGAaaCGAGGGCgaagGGACUu -3' miRNA: 3'- aUAAggCGaCUGCU--GCUCCUG----CCUGG- -5' |
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20860 | 3' | -54.6 | NC_004689.1 | + | 41255 | 0.68 | 0.719316 |
Target: 5'- cGUUCCGUUGaACGACGuGGACa---- -3' miRNA: 3'- aUAAGGCGAC-UGCUGCuCCUGccugg -5' |
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20860 | 3' | -54.6 | NC_004689.1 | + | 54854 | 0.69 | 0.68762 |
Target: 5'- gAUUCUGC-GACGGCGguGGGaACGGGgCg -3' miRNA: 3'- aUAAGGCGaCUGCUGC--UCC-UGCCUgG- -5' |
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20860 | 3' | -54.6 | NC_004689.1 | + | 29627 | 0.8 | 0.172125 |
Target: 5'- --cUCCGCUGaucgcacgGCGACGAGuGACGGuACCg -3' miRNA: 3'- auaAGGCGAC--------UGCUGCUC-CUGCC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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