Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20861 | 3' | -54.6 | NC_004689.1 | + | 64352 | 0.67 | 0.756833 |
Target: 5'- -gUCCCUCGaaagAACCGGGAacgauuuCGGGaGCg- -3' miRNA: 3'- caAGGGAGCa---UUGGUUCU-------GCCC-CGau -5' |
|||||||
20861 | 3' | -54.6 | NC_004689.1 | + | 40738 | 0.67 | 0.704161 |
Target: 5'- --gCCCaUCGUGccACCAGGACGacggacgccaaccGGGCUGc -3' miRNA: 3'- caaGGG-AGCAU--UGGUUCUGC-------------CCCGAU- -5' |
|||||||
20861 | 3' | -54.6 | NC_004689.1 | + | 22954 | 0.72 | 0.439631 |
Target: 5'- gGUUCCCggCGUGguugcACCGGGACG-GGCUGc -3' miRNA: 3'- -CAAGGGa-GCAU-----UGGUUCUGCcCCGAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home