miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20863 3' -57.1 NC_004689.1 + 17099 0.66 0.704208
Target:  5'- uGCGgUGAGGCCGgucUGAGUGacguuGGCCg -3'
miRNA:   3'- -UGUgGCUCCGGUa--GCUUACggu--CCGG- -5'
20863 3' -57.1 NC_004689.1 + 33620 0.66 0.704208
Target:  5'- aACACCGAGaCCAaCGcaccgGCCAcGCCg -3'
miRNA:   3'- -UGUGGCUCcGGUaGCuua--CGGUcCGG- -5'
20863 3' -57.1 NC_004689.1 + 40885 0.66 0.703158
Target:  5'- gUACCGucGCCGuUCGGAUcgcgcacGUCAGGUCg -3'
miRNA:   3'- uGUGGCucCGGU-AGCUUA-------CGGUCCGG- -5'
20863 3' -57.1 NC_004689.1 + 22101 0.66 0.693679
Target:  5'- -uGCCGAcuGCCAgacCGGAUGCCuuuGcGCCa -3'
miRNA:   3'- ugUGGCUc-CGGUa--GCUUACGGu--C-CGG- -5'
20863 3' -57.1 NC_004689.1 + 17875 0.66 0.683092
Target:  5'- --uUCGGGGUCGUCGGaucgaaGUGCCAcaGGUCc -3'
miRNA:   3'- uguGGCUCCGGUAGCU------UACGGU--CCGG- -5'
20863 3' -57.1 NC_004689.1 + 53056 0.67 0.640386
Target:  5'- uCACCGuucGGCgAuUCGAcgGCCcagcGGCCa -3'
miRNA:   3'- uGUGGCu--CCGgU-AGCUuaCGGu---CCGG- -5'
20863 3' -57.1 NC_004689.1 + 70421 0.67 0.639314
Target:  5'- aGCuuCGAuGGCC-UCGggUGCCAcgaccauGGUCg -3'
miRNA:   3'- -UGugGCU-CCGGuAGCuuACGGU-------CCGG- -5'
20863 3' -57.1 NC_004689.1 + 42380 0.67 0.629668
Target:  5'- uGCugCGGGGCaa-CGAGUcucGCCGucucGGCCa -3'
miRNA:   3'- -UGugGCUCCGguaGCUUA---CGGU----CCGG- -5'
20863 3' -57.1 NC_004689.1 + 13010 0.67 0.608247
Target:  5'- aGCACCGccgcGCUggCGAAUGCCcGuGCCg -3'
miRNA:   3'- -UGUGGCuc--CGGuaGCUUACGGuC-CGG- -5'
20863 3' -57.1 NC_004689.1 + 54154 0.67 0.586903
Target:  5'- -gAUCGAGGUCGUCGGuuuCCucggAGGCCg -3'
miRNA:   3'- ugUGGCUCCGGUAGCUuacGG----UCCGG- -5'
20863 3' -57.1 NC_004689.1 + 27218 0.68 0.555176
Target:  5'- cCGCCGAGGUaauUCGAgaagaaAUGCCAugcGGCg -3'
miRNA:   3'- uGUGGCUCCGgu-AGCU------UACGGU---CCGg -5'
20863 3' -57.1 NC_004689.1 + 40838 0.68 0.555176
Target:  5'- ---aCGuuGCCGUCGAGUGCCu-GCCa -3'
miRNA:   3'- ugugGCucCGGUAGCUUACGGucCGG- -5'
20863 3' -57.1 NC_004689.1 + 10086 0.76 0.196131
Target:  5'- aACGCCGcauAGGCCGUcccacCGGgcGUGCCGGGUCg -3'
miRNA:   3'- -UGUGGC---UCCGGUA-----GCU--UACGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.