Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20863 | 5' | -52.7 | NC_004689.1 | + | 49739 | 0.66 | 0.92499 |
Target: 5'- aCGG-UGGAaACCgucuUUGcCCUugGGCGg -3' miRNA: 3'- gGCCuACCUgUGGa---AAC-GGAugCUGC- -5' |
|||||||
20863 | 5' | -52.7 | NC_004689.1 | + | 15754 | 0.66 | 0.906555 |
Target: 5'- uCgGGGUGGccugcacguCGCCUgccagcggUGCCUugGGCu -3' miRNA: 3'- -GgCCUACCu--------GUGGAa-------ACGGAugCUGc -5' |
|||||||
20863 | 5' | -52.7 | NC_004689.1 | + | 21593 | 0.67 | 0.885738 |
Target: 5'- gCCGGAUcGAUACCcg-GCUUgAUGACGa -3' miRNA: 3'- -GGCCUAcCUGUGGaaaCGGA-UGCUGC- -5' |
|||||||
20863 | 5' | -52.7 | NC_004689.1 | + | 10540 | 0.69 | 0.771737 |
Target: 5'- gCCGGAggGGugGCCgUUGCCgggggaGugGg -3' miRNA: 3'- -GGCCUa-CCugUGGaAACGGaug---CugC- -5' |
|||||||
20863 | 5' | -52.7 | NC_004689.1 | + | 22950 | 0.71 | 0.65605 |
Target: 5'- cCCGGcGUGGuuGCACCgggacgGgCUGCGACGa -3' miRNA: 3'- -GGCC-UACC--UGUGGaaa---CgGAUGCUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home