Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20866 | 3' | -50.5 | NC_004689.1 | + | 54653 | 0.66 | 0.95418 |
Target: 5'- --cGGCGCACugGggagAUUCGcUGGCGg -3' miRNA: 3'- gaaCCGUGUGugCag--UAAGUuGCCGU- -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 56388 | 0.66 | 0.939962 |
Target: 5'- ---cGCGCAC-CGUCGUUCGcuUGGCGa -3' miRNA: 3'- gaacCGUGUGuGCAGUAAGUu-GCCGU- -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 40158 | 0.67 | 0.934107 |
Target: 5'- cCUUGGCGCggcgcucGCACG-Cug-CGACGGUg -3' miRNA: 3'- -GAACCGUG-------UGUGCaGuaaGUUGCCGu -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 15749 | 0.67 | 0.923173 |
Target: 5'- -gUGGCcUGCACGUCGccugcCAGCGGUg -3' miRNA: 3'- gaACCGuGUGUGCAGUaa---GUUGCCGu -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 16776 | 0.67 | 0.923173 |
Target: 5'- gUUGGC-CugAauguUGUCGUUCGcGCGGCAc -3' miRNA: 3'- gAACCGuGugU----GCAGUAAGU-UGCCGU- -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 12972 | 0.68 | 0.889454 |
Target: 5'- --aGGCGuagaACGCGUCGaUCAGCGGg- -3' miRNA: 3'- gaaCCGUg---UGUGCAGUaAGUUGCCgu -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 65056 | 0.68 | 0.881873 |
Target: 5'- uCUUGuGUAgGCACGUCGggCAccAUGGCGc -3' miRNA: 3'- -GAAC-CGUgUGUGCAGUaaGU--UGCCGU- -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 7544 | 0.7 | 0.798573 |
Target: 5'- --cGGCACGCugGcgugcggUCAUcuuccgcuuagccaUCAGCGGCGc -3' miRNA: 3'- gaaCCGUGUGugC-------AGUA--------------AGUUGCCGU- -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 50667 | 0.7 | 0.782556 |
Target: 5'- --aGGuCGCACAgGUCGUUgAACuGGCAc -3' miRNA: 3'- gaaCC-GUGUGUgCAGUAAgUUG-CCGU- -5' |
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20866 | 3' | -50.5 | NC_004689.1 | + | 64490 | 0.71 | 0.740793 |
Target: 5'- --gGGUACGCcaGCGUgAUUCAACuGGCGu -3' miRNA: 3'- gaaCCGUGUG--UGCAgUAAGUUG-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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