miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20867 5' -49.6 NC_004689.1 + 14280 0.66 0.979506
Target:  5'- uCGGUAAcgGUCGccuuGUCuUCGGCGUcagaacgggccUGCCAg -3'
miRNA:   3'- -GCCGUU--UAGC----UAGuAGCUGCA-----------ACGGU- -5'
20867 5' -49.6 NC_004689.1 + 26452 0.66 0.974206
Target:  5'- aCGGU--GUCGuagg-UGACGUUGCCGa -3'
miRNA:   3'- -GCCGuuUAGCuaguaGCUGCAACGGU- -5'
20867 5' -49.6 NC_004689.1 + 9793 0.66 0.971212
Target:  5'- uCGGUGAGUC---CAUCGACGgcUGCCu -3'
miRNA:   3'- -GCCGUUUAGcuaGUAGCUGCa-ACGGu -5'
20867 5' -49.6 NC_004689.1 + 22171 0.66 0.967975
Target:  5'- gCGaGC-AGUCGGUCcacuGUCGggagcACGUUGCCGg -3'
miRNA:   3'- -GC-CGuUUAGCUAG----UAGC-----UGCAACGGU- -5'
20867 5' -49.6 NC_004689.1 + 49881 0.67 0.964488
Target:  5'- aGGUAGuuGUCGAUCAU-GAUG-UGCCc -3'
miRNA:   3'- gCCGUU--UAGCUAGUAgCUGCaACGGu -5'
20867 5' -49.6 NC_004689.1 + 10903 0.68 0.920883
Target:  5'- -aGCAAcgCG-UCGUUGGCGUcgUGCCAc -3'
miRNA:   3'- gcCGUUuaGCuAGUAGCUGCA--ACGGU- -5'
20867 5' -49.6 NC_004689.1 + 40856 0.69 0.90124
Target:  5'- aGGuCGAGUgCGAUCuUC-ACGUUGCCGu -3'
miRNA:   3'- gCC-GUUUA-GCUAGuAGcUGCAACGGU- -5'
20867 5' -49.6 NC_004689.1 + 23984 0.69 0.90124
Target:  5'- uGGCccAAAUCGAUCAU-GGCGUuUGUCGu -3'
miRNA:   3'- gCCG--UUUAGCUAGUAgCUGCA-ACGGU- -5'
20867 5' -49.6 NC_004689.1 + 6959 0.7 0.845892
Target:  5'- uGGC-AGUUGAUCGUCGGgccaGUugUGCCAa -3'
miRNA:   3'- gCCGuUUAGCUAGUAGCUg---CA--ACGGU- -5'
20867 5' -49.6 NC_004689.1 + 25450 0.72 0.779237
Target:  5'- uGGcCGGAUCGAUCuUCGGCGg-GCCu -3'
miRNA:   3'- gCC-GUUUAGCUAGuAGCUGCaaCGGu -5'
20867 5' -49.6 NC_004689.1 + 64261 0.73 0.704862
Target:  5'- gCGGUAGG-CG-UCAgggaUCGACGUUGCCGu -3'
miRNA:   3'- -GCCGUUUaGCuAGU----AGCUGCAACGGU- -5'
20867 5' -49.6 NC_004689.1 + 21281 0.73 0.704862
Target:  5'- uGGCucugcauGUCGGUCcacaucugAUUGACGUUGCCGc -3'
miRNA:   3'- gCCGuu-----UAGCUAG--------UAGCUGCAACGGU- -5'
20867 5' -49.6 NC_004689.1 + 28668 0.73 0.693846
Target:  5'- uGGCAAcGUCGAUgAUCGAU-UUGCCGg -3'
miRNA:   3'- gCCGUU-UAGCUAgUAGCUGcAACGGU- -5'
20867 5' -49.6 NC_004689.1 + 6003 0.74 0.682767
Target:  5'- uCGGCAAuGUCG-UCGUCGgucagaGCGUUGCCc -3'
miRNA:   3'- -GCCGUU-UAGCuAGUAGC------UGCAACGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.